diff TrackHub.py @ 10:91b3558fa73f draft

planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 479fc6490e24ca0e5034ae6c3579882e97e095e6-dirty

--- a/TrackHub.py	Fri May 19 16:32:23 2017 -0400
+++ b/TrackHub.py	Wed May 31 13:38:46 2017 -0400
@@ -3,6 +3,7 @@
 import os
 import subprocess
 import shutil
+import zipfile
 import json
 import utils
 
@@ -72,7 +73,14 @@
         print "finished name index \n"
 
     def makeArchive(self):
-        shutil.make_archive(self.out_path, 'zip', self.out_path)
+        #shutil.make_archive(self.out_path, 'zip', self.out_path)
+        os.chdir(os.path.dirname(self.out_path))
+        with zipfile.ZipFile(self.out_path + '.zip', 'w', zipfile.ZIP_DEFLATED, allowZip64=True) as zf:
+            for root, _, filenames in os.walk(os.path.basename(self.out_path)):
+                for name in filenames:
+                    name = os.path.join(root, name)
+                    name = os.path.normpath(name)
+                    zf.write(name, name)
         file_dir = os.path.abspath(self.outfile)
         source_dir = os.path.dirname(file_dir)
         folder_name = os.path.basename(self.outfolder)