Mercurial > repos > yating-l > jbrowsearchivecreator

diff trackObject.py @ 15:671231da45f9 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 594c5fa1e3cdb378ecf6b5490ec2cbac5fa8a61e-dirty
author yating-l
date Wed, 05 Jul 2017 15:47:15 -0400
parents b5d7748d1b7b
children
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line diff
--- a/trackObject.py	Mon Jul 03 16:05:49 2017 -0400
+++ b/trackObject.py	Wed Jul 05 15:47:15 2017 -0400
@@ -56,6 +56,8 @@
             bedToGff3.bedToGff3(dataFile, self.chrom_size, 'trfbig', des_path)
         elif dataType == 'bedSpliceJunctions':
             bedToGff3.bedToGff3(dataFile, self.chrom_size, 'regtools', des_path)
+        elif dataType == 'bigpsl':
+            bedToGff3.bedToGff3(dataFile, self.chrom_size, 'blat', des_path)
         elif dataType == 'blastxml':
             blastxmlToGff3.blastxml2gff3(dataFile, des_path)
         elif dataType == 'gtf':