Mercurial > repos > yating-l > jbrowsearchivecreator

diff bedToGff3.py @ 18:466d52f83079 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 594c5fa1e3cdb378ecf6b5490ec2cbac5fa8a61e-dirty
author yating-l
date Thu, 06 Jul 2017 15:24:29 -0400
parents 671231da45f9
children
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--- a/bedToGff3.py	Wed Jul 05 16:07:45 2017 -0400
+++ b/bedToGff3.py	Thu Jul 06 15:24:29 2017 -0400
@@ -121,6 +121,11 @@
                 attribute['blockcount'] = li[9]
                 attribute['blocksizes'] = li[10]
                 attribute['chromstarts'] = li[11]
+                attribute['ochrom_start'] = li[12]
+                attribute['ochrom_end'] = li[13]
+                attribute['ochrom_strand'] = li[14]
+                attribute['ochrom_size'] = li[15]
+                attribute['ochrom_starts'] = li[16]
                 attribute['sequence on other chromosome'] = li[17]
                 attribute['cds in ncbi format'] = li[18]
                 attribute['size of target chromosome'] = li[19]