Mercurial > repos > yating-l > jbrowsearchivecreator

diff TrackHub.py @ 31:127037c49bc8 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 691e5366893905d30943a3cb8cdfb6341f0f5362-dirty
author yating-l
date Mon, 16 Oct 2017 18:03:58 -0400
parents 31a41ce128cc
children 7b955a58d8f2
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line diff
--- a/TrackHub.py	Fri Oct 13 16:19:03 2017 -0400
+++ b/TrackHub.py	Mon Oct 16 18:03:58 2017 -0400
@@ -16,7 +16,7 @@
 
 
 class TrackHub:
-    def __init__(self, inputFastaFile, apollo_user, outputFile, extra_files_path, tool_directory, trackType, apollo_host):
+    def __init__(self, inputFastaFile, apollo_user, outputFile, extra_files_path, tool_directory, trackType, apollo_host, user_email):
         
         self.rootAssemblyHub = None
 
@@ -37,7 +37,7 @@
         self.chromSizesFile = None
 
         # Set up apollo
-        self.apollo = ApolloInstance(apollo_host)
+        self.apollo = ApolloInstance(apollo_host, tool_directory, user_email)
         self.apollo_user = apollo_user
         
         # Set all the missing variables of this class, and create physically the folders/files