Mercurial > repos > yating-l > jbrowsearchivecreator

diff util/Reader.py @ 33:07cc5384dd61 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 74a020b6b0a2fa7ff5670d7f154de838dee51dfd
author yating-l
date Wed, 25 Oct 2017 12:43:23 -0400
parents 7b955a58d8f2
children 4a69515eed63
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--- a/util/Reader.py	Fri Oct 20 11:22:21 2017 -0400
+++ b/util/Reader.py	Wed Oct 25 12:43:23 2017 -0400
@@ -11,10 +11,7 @@
 from datatypes.interval.BedSpliceJunctions import BedSpliceJunctions
 from datatypes.interval.BlastXml import BlastXml
 from datatypes.interval.Gff3 import Gff3
-from datatypes.interval.Gff3_mrna import Gff3_mrna
-from datatypes.interval.Gff3_transcript import Gff3_transcript
 from datatypes.interval.Gtf import Gtf
-from datatypes.interval.GtfStringTie import GtfStringTie
 from datatypes.interval.BigPsl import BigPsl
 from datatypes.interval.BedBlatAlignments import BedBlatAlignments
 from datatypes.interval.BedBlastAlignments import BedBlastAlignments
@@ -26,7 +23,7 @@
     
     DATATYPE_CLASS = [Bam, BigWig, Bed, BedSimpleRepeats, 
         BedSpliceJunctions, BigPsl, BedBlatAlignments, BedBlastAlignments, 
-        BlastXml, Gff3, Gff3_mrna, Gff3_transcript, Gff3_mrna, Gtf, GtfStringTie, Psl, Fasta]
+        BlastXml, Gff3, Gtf, Psl, Fasta]
 
     def __init__(self, input_json_file):
         self.inputFile = input_json_file