diff TrackHub.py @ 33:07cc5384dd61 draft

planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 74a020b6b0a2fa7ff5670d7f154de838dee51dfd

--- a/TrackHub.py	Fri Oct 20 11:22:21 2017 -0400
+++ b/TrackHub.py	Wed Oct 25 12:43:23 2017 -0400
@@ -121,7 +121,7 @@
 
         with open(self.outputFile, 'w') as htmlfile:
             htmlMakoRendered = htmlTemplate.render(
-            genome_name = self.genome_name,
+            species_folder = os.path.relpath(self.mySpecieFolderPath, self.extra_files_path),
             trackList = os.path.relpath(self.trackList, self.extra_files_path)
         )
             htmlfile.write(htmlMakoRendered)
@@ -129,7 +129,8 @@
         #    htmlstr = 'The new Organism "%s" is created on Apollo: <br>' % self.genome_name
         #    jbrowse_hub = '<li><a href = "%s" target="_blank">View JBrowse Hub on Apollo</a></li>' % host_name
         #    htmlstr += jbrowse_hub
-        #    htmlfile.write(htmlstr)     
+        #    htmlfile.write(htmlstr)   
+          
 
 
     def __createAssemblyHub__(self, extra_files_path):