Mercurial > repos > yating-l > jbrowsearchivecreator

diff util/subtools.py @ 46:061da5d3a219 draft

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planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 3160592f4119e684ab5843dd28a2e6cf11df0121-dirty
author yating-l
date Tue, 19 Jun 2018 16:28:36 -0400
parents 4a69515eed63
children 1eb4adefd747
line wrap: on
line diff
--- a/util/subtools.py	Tue May 01 21:52:46 2018 -0400
+++ b/util/subtools.py	Tue Jun 19 16:28:36 2018 -0400
@@ -382,8 +382,11 @@
     p = _handleExceptionAndCheckCall(array_call)
     return p       
 
-def generate_names(outputFolder, hashBits=4):
-    array_call = ['generate-names.pl', '--hashBits', '4', '-v', '--out', outputFolder]
+def generate_names(outputFolder, nameIndexTrackList, hashBits=4):
+    array_call = ['generate-names.pl', '--hashBits', hashBits, '-v', '--completionLimit', '0', '--out', outputFolder]
+    if nameIndexTrackList:
+        array_call.append('--tracks')
+        array_call.append(','.join(nameIndexTrackList))
     p = _handleExceptionAndCheckCall(array_call)
     return p