Mercurial > repos > yating-l > jbrowsearchivecreator

comparison TrackHub.py @ 13:cdc32923786d draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit ca6aeaf809d46a479638655ad11775f3d65c14f9-dirty
author yating-l
date Mon, 03 Jul 2017 12:35:51 -0400
parents 45b5cb50c29e
children a377a3afe210
comparison
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12:b5d7748d1b7b 13:cdc32923786d
11 class TrackHub: 11 class TrackHub:
12 def __init__(self, inputFiles, reference, outputDirect, tool_dir, genome, extra_files_path, metaData, jbrowse_host): 12 def __init__(self, inputFiles, reference, outputDirect, tool_dir, genome, extra_files_path, metaData, jbrowse_host):
13 self.input_files = inputFiles.tracks 13 self.input_files = inputFiles.tracks
14 self.outfile = outputDirect 14 self.outfile = outputDirect
15 self.outfolder = extra_files_path 15 self.outfolder = extra_files_path
16 self.out_path = os.path.join(extra_files_path, genome) 16 self.out_path = os.path.join(extra_files_path, 'myHub')
17 self.reference = reference 17 self.reference = reference
18 self.tool_dir = tool_dir 18 self.tool_dir = tool_dir
19 self.metaData = metaData 19 self.metaData = metaData
20 self.raw = os.path.join(self.out_path, 'raw') 20 self.raw = os.path.join(self.out_path, 'raw')
21 self.json = os.path.join(self.out_path, 'json') 21 self.json = os.path.join(self.out_path, 'json')