comparison util/subtools.py @ 35:68466f5064ce draft

planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit a500f7ab2119cc5faaf80393bd87428389d06880

34:3285f5d22330

    if os.path.exists(filename):
        return filename
    else:
        raise ValueError('Did not find bai file')

def flatfile_to_json(inputFile, dataType, trackType, trackLabel, outputFolder, options=None, compress=False):
    if "bed" in dataType:
        fileType = "--bed"
    elif "gff" in dataType:
        fileType = "--gff"
    else:

35:68466f5064ce

    if os.path.exists(filename):
        return filename
    else:
        raise ValueError('Did not find bai file')

def flatfile_to_json(inputFile, dataType, trackType, trackLabel, outputFolder, options=None, compress=True):
    if "bed" in dataType:
        fileType = "--bed"
    elif "gff" in dataType:
        fileType = "--gff"
    else: