comparison tracks/CanvasFeatures.py @ 46:061da5d3a219 draft

planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 3160592f4119e684ab5843dd28a2e6cf11df0121-dirty

45:d56955fc4c75

        track['type'] = 'JBrowse/View/Track/' + self.trackType
        track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
        if self.dataType == 'gff':
            # need .gff3.gz extension to index the name of the track with generate-name.pl
            track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
            # needed to show match_part in Blat and Blast alignment as subfeatures
            track['glyph'] = "JBrowse/View/FeatureGlyph/Segments"
        else:
            track['urlTemplate'] = os.path.join('tracks', self.trackName)
        track['label'] = self.trackLabel
        track['category'] = self.extraSettings['category']
        track['style'] = self.extraSettings['style']
        extraConfigs = track
        return extraConfigs

46:061da5d3a219

        track['type'] = 'JBrowse/View/Track/' + self.trackType
        track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
        if self.dataType == 'gff':
            # need .gff3.gz extension to index the name of the track with generate-name.pl
            track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
        else:
            track['urlTemplate'] = os.path.join('tracks', self.trackName)
        if 'glyph' in self.extraSettings:
            track['glyph'] = self.extraSettings['glyph']
        if 'subfeatureClasses' in self.extraSettings:
            track['subfeatureClasses'] = self.extraSettings['subfeatureClasses']
        track['label'] = self.trackLabel
        track['category'] = self.extraSettings['category']
        track['style'] = self.extraSettings['style']
        extraConfigs = track
        return extraConfigs