Mercurial > repos > yating-l > jbrowse_hub
changeset 24:a051609fc8b4 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty
| author | yating-l |
|---|---|
| date | Tue, 14 Mar 2017 17:03:13 -0400 |
| parents | 2a12d257f95d |
| children | 55c62db02917 |
| files | TrackHub.py |
| diffstat | 1 files changed, 1 insertions(+), 6 deletions(-) [+] |
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--- a/TrackHub.py Tue Mar 14 16:28:20 2017 -0400 +++ b/TrackHub.py Tue Mar 14 17:03:13 2017 -0400 @@ -60,6 +60,7 @@ bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM' bam_track['label'] = track['fileName'] bam_track['urlTemplate'] = os.path.join('../raw', track['fileName']) + bam_track['baiUrlTemplate'] = os.path.join('../raw', track['fileName']) utils.add_tracks_to_json(json_file, bam_track, 'add_tracks') print "add bam track\n" elif track['dataType'] == 'bigwig': @@ -69,12 +70,6 @@ bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName']) bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot' bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig' - bigwig_track['variance_band'] = True - bigwig_track['style'] = dict() - bigwig_track['style']['pos_color'] = '#FFA600' - bigwig_track['style']['neg_color'] = '#005EFF' - bigwig_track['style']['clip_marker_color'] = 'red' - bigwig_track['style']['height'] = 100 utils.add_tracks_to_json(json_file, bigwig_track, 'add_tracks') else: gff3_file = os.path.join(self.raw, track['fileName'])