# HG changeset patch # User yating-l # Date 1489522989 14400 # Node ID fcf2865c950c0cb068749ca6d5371d2066d8dcb7 # Parent 7e1c25080972a3384261522fec31948f402eda7d planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty diff -r 7e1c25080972 -r fcf2865c950c TrackHub.py --- a/TrackHub.py Tue Mar 14 16:17:48 2017 -0400 +++ b/TrackHub.py Tue Mar 14 16:23:09 2017 -0400 @@ -57,6 +57,7 @@ json_file = os.path.join(self.json, "trackList.json") bam_track = dict() bam_track['type'] = 'JBrowse/View/Track/Alignments2' + bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM' bam_track['label'] = track['fileName'] bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName']) utils.add_tracks_to_json(json_file, bam_track, 'add_tracks') @@ -67,6 +68,7 @@ bigwig_track['label'] = track['fileName'] bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName']) bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot' + bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig' bigwig_track['variance_band'] = True bigwig_track['style'] = dict() bigwig_track['style']['pos_color'] = '#FFA600'