# HG changeset patch
# User yating-l
# Date 1490028372 14400
# Node ID b32f9f4793f8c7bb9fb8bc84f4641f49a4bc120b
# Parent  a5108e5010b48098331c81cfe082eaa55e235702
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 149c5cbda82f49f260767b5710f0c2160eebc881-dirty

diff -r a5108e5010b4 -r b32f9f4793f8 jbrowse_hub.xml
--- a/jbrowse_hub.xml	Mon Mar 20 12:35:33 2017 -0400
+++ b/jbrowse_hub.xml	Mon Mar 20 12:46:12 2017 -0400
@@ -36,7 +36,7 @@
         #end def
 
         #for $g in $group
-        #for $f in $format
+        #for $f in $g.format
             #set track_label =  str($f.formatChoice.label)
             #set group_name = str($g.group_name)
             #set extra_data_dict = {"label" : $track_label, "category" : $group_name} 
@@ -251,11 +251,14 @@
         <test>
             <param name="reference" value="dbia3/raw/dbia3.fa" />
             <param name="output" value="hubtest" />
-            <repeat name="format">
-                <conditional name="formatChoice">
-                    <param name="format_select" value="gff3_transcript"/>
-                    <param name="GFF3_transcript" value="dbia3/raw/Augustus_on_data_3__GTF_GFF.gff3" />
-                </conditional>
+            <repeat name="group">
+                <param name="group_name" value="Default group"/>
+                <repeat name="format">
+                    <conditional name="formatChoice">
+                        <param name="format_select" value="gff3_transcript"/>
+                        <param name="GFF3_transcript" value="dbia3/raw/Augustus_on_data_3__GTF_GFF.gff3" />
+                    </conditional>
+                </repeat>
             </repeat>
             <output name="output" file="hubtest" >
             </output>