# HG changeset patch
# User yating-l
# Date 1489520230 14400
# Node ID 49841ae99869bba70ce3ee8a690893ef294c7053
# Parent  2edc47a6d575cafc752fd4846a249b1f737f1699
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty

diff -r 2edc47a6d575 -r 49841ae99869 TrackHub.py
--- a/TrackHub.py	Tue Mar 14 15:27:45 2017 -0400
+++ b/TrackHub.py	Tue Mar 14 15:37:10 2017 -0400
@@ -57,8 +57,8 @@
             json_file = os.path.join(self.json, "trackList.json")
             bam_track = dict()
             bam_track['type'] = 'JBrowse/View/Track/Alignments2'
-            bam_track['label'] = track.fileName
-            bam_track['urlTemplate'] = os.path.join('../raw', track.fileName)
+            bam_track['label'] = track['fileName']
+            bam_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
             utils.add_tracks_to_json(json_file, bam_track, 'add_tracks')
             print "add bam track\n"
         elif track['dataType'] == 'bigwig':
@@ -66,7 +66,7 @@
             bigwig_track = dict()
             bigwig_track['label'] = 'rnaseq'
             bigwig_track['key'] = 'RNA-Seq Coverage'
-            bigwig_track['urlTemplate'] = os.path.join('../raw', track.fileName)
+            bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
             bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot'
             bigwig_track['variance_band'] = True
             bigwig_track['style'] = dict()