# HG changeset patch
# User yating-l
# Date 1489523300 14400
# Node ID 2a12d257f95d48689f39d6b2a279e3225aa76443
# Parent  fcf2865c950c0cb068749ca6d5371d2066d8dcb7
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty

diff -r fcf2865c950c -r 2a12d257f95d TrackHub.py
--- a/TrackHub.py	Tue Mar 14 16:23:09 2017 -0400
+++ b/TrackHub.py	Tue Mar 14 16:28:20 2017 -0400
@@ -59,14 +59,14 @@
             bam_track['type'] = 'JBrowse/View/Track/Alignments2'
             bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM'
             bam_track['label'] = track['fileName']
-            bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
+            bam_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
             utils.add_tracks_to_json(json_file, bam_track, 'add_tracks')
             print "add bam track\n"
         elif track['dataType'] == 'bigwig':
             json_file = os.path.join(self.json, "trackList.json")
             bigwig_track = dict()
             bigwig_track['label'] = track['fileName']
-            bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
+            bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
             bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot'
             bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig'
             bigwig_track['variance_band'] = True