# HG changeset patch # User yating-l # Date 1489523300 14400 # Node ID 2a12d257f95d48689f39d6b2a279e3225aa76443 # Parent fcf2865c950c0cb068749ca6d5371d2066d8dcb7 planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty diff -r fcf2865c950c -r 2a12d257f95d TrackHub.py --- a/TrackHub.py Tue Mar 14 16:23:09 2017 -0400 +++ b/TrackHub.py Tue Mar 14 16:28:20 2017 -0400 @@ -59,14 +59,14 @@ bam_track['type'] = 'JBrowse/View/Track/Alignments2' bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM' bam_track['label'] = track['fileName'] - bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName']) + bam_track['urlTemplate'] = os.path.join('../raw', track['fileName']) utils.add_tracks_to_json(json_file, bam_track, 'add_tracks') print "add bam track\n" elif track['dataType'] == 'bigwig': json_file = os.path.join(self.json, "trackList.json") bigwig_track = dict() bigwig_track['label'] = track['fileName'] - bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName']) + bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName']) bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot' bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig' bigwig_track['variance_band'] = True