Mercurial > repos > yating-l > jbrowse_hub

diff TrackHub.py @ 22:fcf2865c950c draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty
author yating-l
date Tue, 14 Mar 2017 16:23:09 -0400
parents 7e1c25080972
children 2a12d257f95d
line wrap: on
line diff
--- a/TrackHub.py	Tue Mar 14 16:17:48 2017 -0400
+++ b/TrackHub.py	Tue Mar 14 16:23:09 2017 -0400
@@ -57,6 +57,7 @@
             json_file = os.path.join(self.json, "trackList.json")
             bam_track = dict()
             bam_track['type'] = 'JBrowse/View/Track/Alignments2'
+            bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM'
             bam_track['label'] = track['fileName']
             bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
             utils.add_tracks_to_json(json_file, bam_track, 'add_tracks')
@@ -67,6 +68,7 @@
             bigwig_track['label'] = track['fileName']
             bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
             bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot'
+            bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig'
             bigwig_track['variance_band'] = True
             bigwig_track['style'] = dict()
             bigwig_track['style']['pos_color'] = '#FFA600'