Mercurial > repos > yating-l > jbrowse_hub

diff jbrowse_hub.xml @ 60:ed17bb465bde draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 8386544cbce1efb5e9dd1f805a2099b3e214363f-dirty
author yating-l
date Fri, 07 Apr 2017 12:38:46 -0400
parents 3e5b6f6a9abe
children ea301a2d2229
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--- a/jbrowse_hub.xml	Fri Mar 31 17:11:11 2017 -0400
+++ b/jbrowse_hub.xml	Fri Apr 07 12:38:46 2017 -0400
@@ -19,6 +19,10 @@
         --fasta '$reference' 
         --genome_name '$genome_name'
 
+        #set galaxy_url = str($GALAXY_URL)
+        #set $jbrowse_url = galaxy_url.replace("8080", "80")
+        --jbrowse_host '$jbrowse_url'
+        
         ## json metadata recording from Remi's hub-archive-creator.xml
         #import json
         #set global data_parameter_dict = {}
@@ -100,6 +104,7 @@
     ]]></command>
 
     <inputs>
+        <param name="GALAXY_URL" type="baseurl" value="" />
         <param name="reference" type="data" format="fasta" label="Reference Genome" />
         <param name="genome_name" type="text" size="30" value="unknown" label="Genome name" />
         <repeat name="group" title="New group">