Mercurial > repos > yating-l > jbrowse_hub

diff tool_dependencies.xml @ 7:3511d4f604a7 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty
author yating-l
date Tue, 14 Mar 2017 12:46:35 -0400
parents e7c80e9b70ae
children 49ae780956f0
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--- a/tool_dependencies.xml	Tue Mar 14 12:33:53 2017 -0400
+++ b/tool_dependencies.xml	Tue Mar 14 12:46:35 2017 -0400
@@ -56,5 +56,23 @@
          </install>
          <readme>The well known UCSC tools from Jim Kent.</readme>
     </package>
+    <package name="jbrowse_tools" version="1.12.1">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/jbrowse_tools.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>                       
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>    
+                </actions>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+         </install>
+         <readme>The perl scripts for converting flat files to json.</readme>
+    </package>
+
     
 </tool_dependency>