Mercurial > repos > yating-l > jbrowse_hub

diff TrackHub.py @ 23:2a12d257f95d draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty
author yating-l
date Tue, 14 Mar 2017 16:28:20 -0400
parents fcf2865c950c
children a051609fc8b4
line wrap: on
line diff
--- a/TrackHub.py	Tue Mar 14 16:23:09 2017 -0400
+++ b/TrackHub.py	Tue Mar 14 16:28:20 2017 -0400
@@ -59,14 +59,14 @@
             bam_track['type'] = 'JBrowse/View/Track/Alignments2'
             bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM'
             bam_track['label'] = track['fileName']
-            bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
+            bam_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
             utils.add_tracks_to_json(json_file, bam_track, 'add_tracks')
             print "add bam track\n"
         elif track['dataType'] == 'bigwig':
             json_file = os.path.join(self.json, "trackList.json")
             bigwig_track = dict()
             bigwig_track['label'] = track['fileName']
-            bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
+            bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
             bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot'
             bigwig_track['storeClass'] = 'JBrowse/Store/SeqFeature/BigWig'
             bigwig_track['variance_band'] = True