comparison tool_dependencies.xml @ 5:e7c80e9b70ae draft

planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty

4:c7c1474a6b7d

                    <environment_variable action="set_to" name="PYTHONPATH_BIOPYTHON">$INSTALL_DIR/lib/python</environment_variable>
                </action>
            </actions>
        </install>
    </package>
    
</tool_dependency>

5:e7c80e9b70ae

                    <environment_variable action="set_to" name="PYTHONPATH_BIOPYTHON">$INSTALL_DIR/lib/python</environment_variable>
                </action>
            </actions>
        </install>
    </package>
     <package name="ucsc_tools_340" version="1.0">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>                       
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>    
                </actions>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions_group>
         </install>
         <readme>The well known UCSC tools from Jim Kent.</readme>
    </package>
    
</tool_dependency>