Mercurial > repos > yating-l > jbrowse_hub
comparison jbrowse_hub.py @ 36:d5ec43607f66 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit faeedda55e23f1197bc454d3db2d52af29d786e8-dirty
| author | yating-l |
|---|---|
| date | Fri, 17 Mar 2017 13:04:11 -0400 |
| parents | 39a214ac35a7 |
| children | 75edbc203532 |
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| 35:6d77d3bc0794 | 36:d5ec43607f66 |
|---|---|
| 65 genome = 'unknown' | 65 genome = 'unknown' |
| 66 out_path = 'unknown.html' | 66 out_path = 'unknown.html' |
| 67 extra_files_path = '.' | 67 extra_files_path = '.' |
| 68 tool_directory = '.' | 68 tool_directory = '.' |
| 69 if args.genome_name: | 69 if args.genome_name: |
| 70 genome = utils.sanitize_name(args.genome_name) | 70 genome = args.genome_name |
| 71 if args.out: | 71 if args.out: |
| 72 out_path = args.out | 72 out_path = args.out |
| 73 if args.extra_files_path: | 73 if args.extra_files_path: |
| 74 extra_files_path = utils.sanitize_name(args.extra_files_path) | 74 extra_files_path = args.extra_files_path |
| 75 | 75 |
| 76 #tool_directory not work for Galaxy tool, all tools need to exist in the current PATH, deal with it with tool dependencies | 76 #tool_directory not work for Galaxy tool, all tools need to exist in the current PATH, deal with it with tool dependencies |
| 77 if args.tool_directory: | 77 if args.tool_directory: |
| 78 tool_directory = args.tool_directory | 78 tool_directory = args.tool_directory |
| 79 | 79 |