Mercurial > repos > yating-l > jbrowse_hub
comparison TrackHub.py @ 59:caf649fc310b draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit a505d6c97db9d044761b5ce92be4a39cb84eda29-dirty
author | yating-l |
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date | Fri, 31 Mar 2017 17:11:11 -0400 |
parents | 08bd1378bf43 |
children | ed17bb465bde |
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58:08bd1378bf43 | 59:caf649fc310b |
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105 #run it locally. May need modify | 105 #run it locally. May need modify |
106 def outHtml(self, slink): | 106 def outHtml(self, slink): |
107 with open(self.outfile, 'w') as htmlfile: | 107 with open(self.outfile, 'w') as htmlfile: |
108 htmlstr = 'The JBrowse Hub is created: <br>' | 108 htmlstr = 'The JBrowse Hub is created: <br>' |
109 zipfiles = '<li><a href = "%s">Download</a></li>' | 109 zipfiles = '<li><a href = "%s">Download</a></li>' |
110 jbrowse_hub = '<li><a href = "/JBrowse-1.12.1/index.html?data=%s" target="_blank" onclick="javascript:event.target.port=80">View JBrowse Hub</a></li>' | 110 jbrowse_hub = '<li><a href = "http://192.168.56.11/JBrowse-1.12.1/index.html?data=%s" target="_blank">View JBrowse Hub</a></li>' |
111 filedir_abs = os.path.abspath(self.outfile) | 111 filedir_abs = os.path.abspath(self.outfile) |
112 filedir = os.path.dirname(filedir_abs) | 112 filedir = os.path.dirname(filedir_abs) |
113 filedir = os.path.join(filedir, self.outfolder) | 113 filedir = os.path.join(filedir, self.outfolder) |
114 for root, dirs, files in os.walk(filedir): | 114 for root, dirs, files in os.walk(filedir): |
115 for file in files: | 115 for file in files: |