comparison TrackHub.py @ 55:972b83917c18 draft

planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit a505d6c97db9d044761b5ce92be4a39cb84eda29-dirty

54:9c45b81bc4e6

        subprocess.call(['generate-names.pl', '-v', '--out', self.json])
        print "finished name index \n"

    def makeArchive(self):
        shutil.make_archive(self.out_path, 'zip', self.out_path)
        source = os.path.abspath(self.out_path)
        slink = source.replace('/', '_')
        slink = os.path.join('/home/galaxy/galaxy/static/JBrowse-1.12.1/data', slink)
        try:
            if os.path.islink(slink):
                os.unlink(slink)

55:972b83917c18

        subprocess.call(['generate-names.pl', '-v', '--out', self.json])
        print "finished name index \n"

    def makeArchive(self):
        shutil.make_archive(self.out_path, 'zip', self.out_path)
        file_dir = os.path.abspath(self.outfile)
        source_dir = os.path.dirname(file_dir)
        source_name = os.path.basename(self.out_path)
        source = os.path.join(source_dir, source_name)
        slink = source.replace('/', '_')
        slink = os.path.join('/home/galaxy/galaxy/static/JBrowse-1.12.1/data', slink)
        try:
            if os.path.islink(slink):
                os.unlink(slink)