Mercurial > repos > yating-l > jbrowse_hub
comparison jbrowse_hub.py @ 39:75edbc203532 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit faeedda55e23f1197bc454d3db2d52af29d786e8-dirty
| author | yating-l |
|---|---|
| date | Fri, 17 Mar 2017 19:00:01 -0400 |
| parents | d5ec43607f66 |
| children | a5108e5010b4 |
comparison
equal
deleted
inserted
replaced
| 38:3a3591cf27f9 | 39:75edbc203532 |
|---|---|
| 130 for f in inputfiles: | 130 for f in inputfiles: |
| 131 metadata = {} | 131 metadata = {} |
| 132 #print f | 132 #print f |
| 133 if f in inputs_data.keys(): | 133 if f in inputs_data.keys(): |
| 134 metadata = inputs_data[f] | 134 metadata = inputs_data[f] |
| 135 #print metadata | 135 print metadata |
| 136 #Convert tracks into gff3 format | 136 #Convert tracks into gff3 format |
| 137 all_tracks.addToRaw(f, datatype, metadata) | 137 all_tracks.addToRaw(f, datatype, metadata) |
| 138 | 138 |
| 139 jbrowseHub = TrackHub.TrackHub(all_tracks, reference, out_path, tool_directory, genome, extra_files_path) | 139 jbrowseHub = TrackHub.TrackHub(all_tracks, reference, out_path, tool_directory, genome, extra_files_path) |
| 140 jbrowseHub.createHub() | 140 jbrowseHub.createHub() |