Mercurial > repos > yating-l > jbrowse_hub

comparison tool_dependencies.xml @ 48:6803152ea92a draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit 073c8ceda5eddfb4ccd07cfa96a8353e5535ffaf-dirty
author yating-l
date Tue, 28 Mar 2017 18:13:27 -0400
parents b7bf45272ab7
children
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47:b7bf45272ab7 48:6803152ea92a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="samtools" version="1.2"> 3 <package name="samtools" version="1.2">
4 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6
6 <package name="numpy" version="1.9"> 7 <package name="numpy" version="1.9">
7 <repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 8 <repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 9 </package>
10
9 <package name="biopython" version="1.68"> 11 <package name="biopython" version="1.68">
10 <readme> 12 <readme>
11 This package is based on package_biopython_1_67 owned by biopython. 13 This package is based on package_biopython_1_67 owned by biopython.
12 https://toolshed.g2.bx.psu.edu/repository?user_id=fd5c6d0f82f315d8 14 https://toolshed.g2.bx.psu.edu/repository?user_id=fd5c6d0f82f315d8
13 15
43 <environment_variable action="set_to" name="PYTHONPATH_BIOPYTHON">$INSTALL_DIR/lib/python</environment_variable> 45 <environment_variable action="set_to" name="PYTHONPATH_BIOPYTHON">$INSTALL_DIR/lib/python</environment_variable>
44 </action> 46 </action>
45 </actions> 47 </actions>
46 </install> 48 </install>
47 </package> 49 </package>
50
48 <package name="ucsc_tools_340" version="1.0"> 51 <package name="ucsc_tools_340" version="1.0">
49 <install version="1.0"> 52 <install version="1.0">
50 <actions_group> 53 <actions_group>
51 <actions architecture="x86_64" os="linux"> 54 <actions architecture="x86_64" os="linux">
52 <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action> 55 <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action>