Mercurial > repos > yating-l > jbrowse_hub

comparison TrackHub.py @ 25:55c62db02917 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty
author yating-l
date Tue, 14 Mar 2017 17:41:29 -0400
parents a051609fc8b4
children a4a54b925c73
comparison
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24:a051609fc8b4 25:55c62db02917
58 bam_track = dict() 58 bam_track = dict()
59 bam_track['type'] = 'JBrowse/View/Track/Alignments2' 59 bam_track['type'] = 'JBrowse/View/Track/Alignments2'
60 bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM' 60 bam_track['storeClass'] = 'JBrowse/Store/SeqFeature/BAM'
61 bam_track['label'] = track['fileName'] 61 bam_track['label'] = track['fileName']
62 bam_track['urlTemplate'] = os.path.join('../raw', track['fileName']) 62 bam_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
63 bam_track['baiUrlTemplate'] = os.path.join('../raw', track['fileName']) 63 #bam_track['baiUrlTemplate'] = os.path.join('../raw', track['fileName'])
64 utils.add_tracks_to_json(json_file, bam_track, 'add_tracks') 64 utils.add_tracks_to_json(json_file, bam_track, 'add_tracks')
65 print "add bam track\n" 65 print "add bam track\n"
66 elif track['dataType'] == 'bigwig': 66 elif track['dataType'] == 'bigwig':
67 json_file = os.path.join(self.json, "trackList.json") 67 json_file = os.path.join(self.json, "trackList.json")
68 bigwig_track = dict() 68 bigwig_track = dict()