Mercurial > repos > yating-l > hubarchivecreatortest

annotate test-data/bed_blast_alignment/__main__.log @ 1:85195e0d4b71 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
author yating-l
date Fri, 29 Sep 2017 13:32:23 -0400
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85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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1 DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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2
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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3 DEBUG:root:Calling faToTwoBit:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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4 DEBUG:root:---------
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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5 DEBUG:root:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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6 DEBUG:root:Calling twoBitInfo:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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7 DEBUG:root:---------
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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8 DEBUG:root:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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9 DEBUG:root:Calling sort:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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10 DEBUG:root:---------
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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11 DEBUG:root:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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12 DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_199.dat
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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13 DEBUG:root:data_value: {u'long_label': u'BLAST alignment', u'name': u'BLAST_alignment_bigpsl', u'database': u'NCBI', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'10'}
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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14 DEBUG:root:sorted_bed_file_name: /home/galaxy/galaxy/database/datasets/000/dataset_199.dat
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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15 DEBUG:root:chrom_sizes_file_name: /tmp/tmpqOqZkp.chrom.sizes
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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16 DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/174/dataset_200_files/myHub/Dbia3/tracks/BLAST_alignment_bigpsl.bb
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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17 DEBUG:root:typeOption: bed12+12
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
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18 DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigPsl.as
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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19 DEBUG:root:tab option: True
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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20 DEBUG:root:Calling bedToBigBed:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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21 DEBUG:root:---------
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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22 DEBUG:root:
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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23 DEBUG:root:----- End of all_datatype_dictionary processing -----
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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24 DEBUG:root:all_datatype_ordered_dictionary keys are: [<BedBlastAlignments.BedBlastAlignments object at 0x7fef7001b410>]
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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25 DEBUG:root:----- Beginning of Track adding processing -----
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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26 DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/174/dataset_200_files/myHub/Dbia3/groups.txt the group Default group
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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27 DEBUG:root:We just added track gonramp_BLAST_alignment_bigpsl_bb (in group default_group)
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
diff changeset
28 DEBUG:root:----- End of Track adding processing -----
85195e0d4b71 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
yating-l
parents:
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29 DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####