Mercurial > repos > yating-l > hubarchivecreator_test

diff hub-archive-creator/util/install_linux_binaries @ 6:9193fe3ee73f draft default tip

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author yating-l
date Thu, 22 Dec 2016 15:59:24 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hub-archive-creator/util/install_linux_binaries	Thu Dec 22 15:59:24 2016 -0500
@@ -0,0 +1,24 @@
+#!/usr/bin/env bash
+
+localBinPath="/usr/local/bin/"
+hgDownloadURl="http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/"
+
+# Binaries needed for HAC
+twoBitInfo="twoBitInfo"
+faToTwoBit="faToTwoBit"
+gff3ToGenePred="gff3ToGenePred"
+gtfToGenePred="gtfToGenePred"
+genePredToBed="genePredToBed"
+# sort="sort"
+bedToBigBed="bedToBigBed"
+
+binariesArray=( ${twoBitInfo} ${faToTwoBit} ${gff3ToGenePred} ${gtfToGenePred} ${genePredToBed} ${bedToBigBed} )
+
+# Download and install binaries
+for binaryName in "${binariesArray[@]}"
+do
+    binaryInstallationPath="${localBinPath}/${binaryName}"
+    sudo wget -P ${localBinPath} "${hgDownloadURl}/${binaryName}"
+    sudo chown ${USER} ${binaryInstallationPath}
+    sudo chmod +x ${binaryInstallationPath}
+done