Mercurial > repos > yating-l > hubarchivecreator_test
comparison hub-archive-creator/spliceJunctions.as @ 6:9193fe3ee73f draft default tip
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author | yating-l |
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date | Thu, 22 Dec 2016 15:59:24 -0500 |
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5:48d7b2dddae6 | 6:9193fe3ee73f |
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1 table spliceJunctions | |
2 "Predicted splice junctions" | |
3 ( | |
4 string chrom; "Reference sequence chromosome or scaffold" | |
5 uint chromStart; "Start position in chromosome" | |
6 uint chromEnd; "End position in chromosome" | |
7 string name; "Name of item" | |
8 uint score; "Score from 0-1000" | |
9 char[1] strand; "+ or -" | |
10 uint thickStart; "Start of where display should be thick (start codon)" | |
11 uint thickEnd; "End of where display should be thick (stop codon)" | |
12 uint reserved; "Used as itemRgb as of 2004-11-22" | |
13 int blockCount; "Number of blocks" | |
14 int[blockCount] blockSizes; "Comma separated list of block sizes" | |
15 int[blockCount] chromStarts; "Start positions relative to chromStart" | |
16 uint junctionScore; "Number of reads supporting the splice junction" | |
17 ) |