Mercurial > repos > yating-l > hubarchivecreator

changeset 29:896889784581 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e42ecb807fb34a8e4ddcf96944dd74d24c695352-dirty
author yating-l
date Thu, 29 Dec 2016 17:34:37 -0500
parents 7c0f5442b53f
children 1f2395ac5d83
files test-data/two_groups_no_track/__main__.log test-data/two_groups_no_track/myHub/Dbia3.html test-data/two_groups_no_track/myHub/Dbia3/Dbia3.2bit test-data/two_groups_no_track/myHub/Dbia3/description.html test-data/two_groups_no_track/myHub/genomes.txt test-data/two_groups_no_track/myHub/hub.txt test-data/two_groups_no_track/two_groups_no_track_trackhub.html
diffstat 5 files changed, 86 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/two_groups_no_track/__main__.log	Thu Dec 29 17:34:37 2016 -0500
@@ -0,0 +1,16 @@
+DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####
+
+DEBUG:root:Calling faToTwoBit:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling twoBitInfo:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:----- End of all_datatype_dictionary processing -----
+DEBUG:root:all_datatype_ordered_dictionary keys are: []
+DEBUG:root:----- Beginning of Track adding processing -----
+DEBUG:root:----- End of Track adding processing -----
+DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####
Binary file test-data/two_groups_no_track/myHub/Dbia3/Dbia3.2bit has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/two_groups_no_track/myHub/genomes.txt	Thu Dec 29 17:34:37 2016 -0500
@@ -0,0 +1,10 @@
+genome Dbia3
+trackDb Dbia3/trackDb.txt
+groups Dbia3/groups.txt
+description Dbia3
+twoBitPath Dbia3/Dbia3.2bit
+organism Dbia3
+defaultPos contig25
+orderKey 4500
+scientificName Dbia3
+htmlPath Dbia3/description.html
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/two_groups_no_track/myHub/hub.txt	Thu Dec 29 17:34:37 2016 -0500
@@ -0,0 +1,6 @@
+hub gonrampDbia3
+shortLabel Dbia3
+longLabel Dbia3
+genomesFile genomes.txt
+email rmarenco@gwu.edu
+descriptionUrl Dbia3.html
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/two_groups_no_track/two_groups_no_track_trackhub.html	Thu Dec 29 17:34:37 2016 -0500
@@ -0,0 +1,54 @@
+
+<html>
+    <body>
+        <p>
+            The following has been generated by Hub Archive Creator:
+        </p>
+        <ul>
+            
+                <li>
+                    myHub
+                </li>
+                <ul>
+                    
+                <li>
+                    <a href="myHub/Dbia3.html">Dbia3.html</a>
+                </li>
+                <li>
+                    <a href="myHub/genomes.txt">genomes.txt</a>
+                </li>
+                <li>
+                    <a href="myHub/hub.txt">hub.txt</a>
+                </li>
+                <li>
+                    Dbia3
+                </li>
+                <ul>
+                    
+                <li>
+                    <a href="myHub/Dbia3/Dbia3.2bit">Dbia3.2bit</a>
+                </li>
+                <li>
+                    <a href="myHub/Dbia3/description.html">description.html</a>
+                </li>
+
+                </ul>
+
+                </ul>
+                <li>
+                    .
+                </li>
+                <ul>
+                    
+                <li>
+                    <a href="./__main__.log">__main__.log</a>
+                </li>
+
+                </ul>
+
+        </ul>
+    </body>
+</html>
+
+
+