# HG changeset patch # User yating-l # Date 1483050389 18000 # Node ID 6872b9583e26948f48b86eae4de1f36883371530 # Parent 7ba8ae9e3a31fdb8bb23693828fdcfd97dd62e1e planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e42ecb807fb34a8e4ddcf96944dd74d24c695352-dirty diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/__main__.log --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_multiple_tracks/__main__.log Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,68 @@ +DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### + +DEBUG:root:Calling faToTwoBit: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling twoBitInfo: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1193.dat +DEBUG:root:data_value: {u'index': u'/home/svc_galaxy/new/galaxy/database/files/_metadata_files/000/metadata_77.dat', u'order_index': u'11', u'name': u'HISAT2_Accepted_Hits', u'track_color': u'#000000', u'group_name': u'Default group'} +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1195.dat +DEBUG:root:data_value: {u'order_index': u'10', u'name': u'RNA-Seq_Alignment_Summary', u'track_color': u'#000000', u'group_name': u'Default group'} +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1188.dat +DEBUG:root:data_value: {u'order_index': u'21', u'name': u'Multi-Fasta_GlimmerHMM_Gene_Predictions', u'track_color': u'#000000', u'group_name': u'Other group'} +DEBUG:root:Calling gff3ToGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling genePredToBigGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpC7M6B_.sorted.bigGenePred +DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmppQM471.chrom.sizes +DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/tracks/Multi-Fasta_GlimmerHMM_Gene_Predictions.bb +DEBUG:root:typeOption: bed12+8 +DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as +DEBUG:root:tab option: True +DEBUG:root:Calling bedToBigBed: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1197.dat +DEBUG:root:data_value: {u'order_index': u'20', u'name': u'StringTie_Assembled_Transcripts', u'track_color': u'#000000', u'group_name': u'Other group'} +DEBUG:root:Calling gtfToGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling genePredToBigGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpirJDCW.sortedBed.bigGenePred +DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmppQM471.chrom.sizes +DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb +DEBUG:root:typeOption: bed12+8 +DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as +DEBUG:root:tab option: True +DEBUG:root:Calling bedToBigBed: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:----- End of all_datatype_dictionary processing ----- +DEBUG:root:all_datatype_ordered_dictionary keys are: [, , , ] +DEBUG:root:----- Beginning of Track adding processing ----- +DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Default group +DEBUG:root:We just added track HISAT2_Accepted_Hits.bam (in group default_group) +DEBUG:root:We DON'T add in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Default group +DEBUG:root:We just added track RNA-Seq_Alignment_Summary.bigwig (in group default_group) +DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Other group +DEBUG:root:We just added track StringTie_Assembled_Transcripts.bb (in group other_group) +DEBUG:root:We DON'T add in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Other group +DEBUG:root:We just added track Multi-Fasta_GlimmerHMM_Gene_Predictions.bb (in group other_group) +DEBUG:root:----- End of Track adding processing ----- +DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/Dbia3.2bit Binary file test-data/two_groups_multiple_tracks/myHub/Dbia3/Dbia3.2bit has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/groups.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_multiple_tracks/myHub/Dbia3/groups.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,10 @@ +name default_group +label Default group +priority 2 +defaultIsClosed 0 + +name other_group +label Other group +priority 2 +defaultIsClosed 0 + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/trackDb.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_multiple_tracks/myHub/Dbia3/trackDb.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,44 @@ + track HISAT2_Accepted_Hits.bam + longLabel HISAT2 Accepted Hits.bam + shortLabel HISAT2 Accepted + bigDataUrl tracks/HISAT2_Accepted_Hits.bam + type bam + visibility pack + thickDrawItem off + priority 11 + color 0,0,0 + group default_group + + track RNA-Seq_Alignment_Summary.bigwig + longLabel RNA-Seq Alignment Summary + shortLabel RNA-Seq Alignme + bigDataUrl tracks/RNA-Seq_Alignment_Summary.bigwig + type bigWig + visibility full + thickDrawItem off + priority 10 + color 0,0,0 + group default_group + + track StringTie_Assembled_Transcripts.bb + longLabel StringTie Assembled Transcripts + shortLabel StringTie Assem + bigDataUrl tracks/StringTie_Assembled_Transcripts.bb + type bigGenePred + visibility dense + thickDrawItem off + priority 20 + color 0,0,0 + group other_group + + track Multi-Fasta_GlimmerHMM_Gene_Predictions.bb + longLabel Multi-Fasta GlimmerHMM Gene Predictions + shortLabel Multi-Fasta Gli + bigDataUrl tracks/Multi-Fasta_GlimmerHMM_Gene_Predictions.bb + type bigGenePred + visibility dense + thickDrawItem off + priority 21 + color 0,0,0 + group other_group + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam Binary file test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam.bai Binary file test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam.bai has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/Multi-Fasta_GlimmerHMM_Gene_Predictions.bb Binary file test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/Multi-Fasta_GlimmerHMM_Gene_Predictions.bb has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/RNA-Seq_Alignment_Summary.bigwig Binary file test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/RNA-Seq_Alignment_Summary.bigwig has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb Binary file test-data/two_groups_multiple_tracks/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/genomes.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_multiple_tracks/myHub/genomes.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,10 @@ +genome Dbia3 +trackDb Dbia3/trackDb.txt +groups Dbia3/groups.txt +description Dbia3 +twoBitPath Dbia3/Dbia3.2bit +organism Dbia3 +defaultPos contig25 +orderKey 4500 +scientificName Dbia3 +htmlPath Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/myHub/hub.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_multiple_tracks/myHub/hub.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,6 @@ +hub gonrampDbia3 +shortLabel Dbia3 +longLabel Dbia3 +genomesFile genomes.txt +email rmarenco@gwu.edu +descriptionUrl Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_multiple_tracks/two_groups_multiple_tracks_trackhub.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_multiple_tracks/two_groups_multiple_tracks_trackhub.html Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,82 @@ + + + +

+ The following has been generated by Hub Archive Creator: +

+ + + + + + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/__main__.log --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_no_track/__main__.log Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,16 @@ +DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### + +DEBUG:root:Calling faToTwoBit: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling twoBitInfo: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:----- End of all_datatype_dictionary processing ----- +DEBUG:root:all_datatype_ordered_dictionary keys are: [] +DEBUG:root:----- Beginning of Track adding processing ----- +DEBUG:root:----- End of Track adding processing ----- +DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/myHub/Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/myHub/Dbia3/Dbia3.2bit Binary file test-data/two_groups_no_track/myHub/Dbia3/Dbia3.2bit has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/myHub/Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/myHub/genomes.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_no_track/myHub/genomes.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,10 @@ +genome Dbia3 +trackDb Dbia3/trackDb.txt +groups Dbia3/groups.txt +description Dbia3 +twoBitPath Dbia3/Dbia3.2bit +organism Dbia3 +defaultPos contig25 +orderKey 4500 +scientificName Dbia3 +htmlPath Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/myHub/hub.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_no_track/myHub/hub.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,6 @@ +hub gonrampDbia3 +shortLabel Dbia3 +longLabel Dbia3 +genomesFile genomes.txt +email rmarenco@gwu.edu +descriptionUrl Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_no_track/two_groups_no_track_trackhub.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_no_track/two_groups_no_track_trackhub.html Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,54 @@ + + + +

+ The following has been generated by Hub Archive Creator: +

+ + + + + + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/__main__.log --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_both/__main__.log Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,42 @@ +DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### + +DEBUG:root:Calling faToTwoBit: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling twoBitInfo: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1195.dat +DEBUG:root:data_value: {u'order_index': u'10', u'name': u'RNA-Seq_Alignment_Summary', u'track_color': u'#000000', u'group_name': u'Default group'} +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1197.dat +DEBUG:root:data_value: {u'order_index': u'20', u'name': u'StringTie_Assembled_Transcripts', u'track_color': u'#000000', u'group_name': u'Other group'} +DEBUG:root:Calling gtfToGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling genePredToBigGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpqNltxC.sortedBed.bigGenePred +DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmplv6Lna.chrom.sizes +DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/914/dataset_1282_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb +DEBUG:root:typeOption: bed12+8 +DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as +DEBUG:root:tab option: True +DEBUG:root:Calling bedToBigBed: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:----- End of all_datatype_dictionary processing ----- +DEBUG:root:all_datatype_ordered_dictionary keys are: [, ] +DEBUG:root:----- Beginning of Track adding processing ----- +DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/914/dataset_1282_files/myHub/Dbia3/groups.txt the group Default group +DEBUG:root:We just added track RNA-Seq_Alignment_Summary.bigwig (in group default_group) +DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/914/dataset_1282_files/myHub/Dbia3/groups.txt the group Other group +DEBUG:root:We just added track StringTie_Assembled_Transcripts.bb (in group other_group) +DEBUG:root:----- End of Track adding processing ----- +DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3/Dbia3.2bit Binary file test-data/two_groups_one_track_both/myHub/Dbia3/Dbia3.2bit has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3/groups.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_both/myHub/Dbia3/groups.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,10 @@ +name default_group +label Default group +priority 2 +defaultIsClosed 0 + +name other_group +label Other group +priority 2 +defaultIsClosed 0 + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3/trackDb.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_both/myHub/Dbia3/trackDb.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,22 @@ + track RNA-Seq_Alignment_Summary.bigwig + longLabel RNA-Seq Alignment Summary + shortLabel RNA-Seq Alignme + bigDataUrl tracks/RNA-Seq_Alignment_Summary.bigwig + type bigWig + visibility full + thickDrawItem off + priority 10 + color 0,0,0 + group default_group + + track StringTie_Assembled_Transcripts.bb + longLabel StringTie Assembled Transcripts + shortLabel StringTie Assem + bigDataUrl tracks/StringTie_Assembled_Transcripts.bb + type bigGenePred + visibility dense + thickDrawItem off + priority 20 + color 0,0,0 + group other_group + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3/tracks/RNA-Seq_Alignment_Summary.bigwig Binary file test-data/two_groups_one_track_both/myHub/Dbia3/tracks/RNA-Seq_Alignment_Summary.bigwig has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb Binary file test-data/two_groups_one_track_both/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/genomes.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_both/myHub/genomes.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,10 @@ +genome Dbia3 +trackDb Dbia3/trackDb.txt +groups Dbia3/groups.txt +description Dbia3 +twoBitPath Dbia3/Dbia3.2bit +organism Dbia3 +defaultPos contig25 +orderKey 4500 +scientificName Dbia3 +htmlPath Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/myHub/hub.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_both/myHub/hub.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,6 @@ +hub gonrampDbia3 +shortLabel Dbia3 +longLabel Dbia3 +genomesFile genomes.txt +email rmarenco@gwu.edu +descriptionUrl Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_both/two_groups_one_track_both_trackhub.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_both/two_groups_one_track_both_trackhub.html Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,73 @@ + + + +

+ The following has been generated by Hub Archive Creator: +

+ + + + + + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/__main__.log --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_first/__main__.log Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,20 @@ +DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### + +DEBUG:root:Calling faToTwoBit: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling twoBitInfo: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1195.dat +DEBUG:root:data_value: {u'order_index': u'10', u'name': u'RNA-Seq_Alignment_Summary', u'track_color': u'#000000', u'group_name': u'Default group'} +DEBUG:root:----- End of all_datatype_dictionary processing ----- +DEBUG:root:all_datatype_ordered_dictionary keys are: [] +DEBUG:root:----- Beginning of Track adding processing ----- +DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/913/dataset_1281_files/myHub/Dbia3/groups.txt the group Default group +DEBUG:root:We just added track RNA-Seq_Alignment_Summary.bigwig (in group default_group) +DEBUG:root:----- End of Track adding processing ----- +DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/Dbia3/Dbia3.2bit Binary file test-data/two_groups_one_track_first/myHub/Dbia3/Dbia3.2bit has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/Dbia3/groups.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_first/myHub/Dbia3/groups.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,5 @@ +name default_group +label Default group +priority 2 +defaultIsClosed 0 + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/Dbia3/trackDb.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_first/myHub/Dbia3/trackDb.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,11 @@ + track RNA-Seq_Alignment_Summary.bigwig + longLabel RNA-Seq Alignment Summary + shortLabel RNA-Seq Alignme + bigDataUrl tracks/RNA-Seq_Alignment_Summary.bigwig + type bigWig + visibility full + thickDrawItem off + priority 10 + color 0,0,0 + group default_group + diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/Dbia3/tracks/RNA-Seq_Alignment_Summary.bigwig Binary file test-data/two_groups_one_track_first/myHub/Dbia3/tracks/RNA-Seq_Alignment_Summary.bigwig has changed diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/genomes.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_first/myHub/genomes.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,10 @@ +genome Dbia3 +trackDb Dbia3/trackDb.txt +groups Dbia3/groups.txt +description Dbia3 +twoBitPath Dbia3/Dbia3.2bit +organism Dbia3 +defaultPos contig25 +orderKey 4500 +scientificName Dbia3 +htmlPath Dbia3/description.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/myHub/hub.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_first/myHub/hub.txt Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,6 @@ +hub gonrampDbia3 +shortLabel Dbia3 +longLabel Dbia3 +genomesFile genomes.txt +email rmarenco@gwu.edu +descriptionUrl Dbia3.html diff -r 7ba8ae9e3a31 -r 6872b9583e26 test-data/two_groups_one_track_first/two_groups_one_track_first_trackhub.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two_groups_one_track_first/two_groups_one_track_first_trackhub.html Thu Dec 29 17:26:29 2016 -0500 @@ -0,0 +1,70 @@ + + + +

+ The following has been generated by Hub Archive Creator: +

+ + + + + +