# HG changeset patch # User yating-l # Date 1483049624 18000 # Node ID 1e33b2bd8443f1ceca0c135cedb590ae1af5c166 # Parent 40ded0b512040807fbbf5288b47323bbaa24b58d planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e42ecb807fb34a8e4ddcf96944dd74d24c695352-dirty diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/__main__.log --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bam/__main__.log Thu Dec 29 17:13:44 2016 -0500 @@ -0,0 +1,20 @@ +DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### + +DEBUG:root:Calling faToTwoBit: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling twoBitInfo: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1193.dat +DEBUG:root:data_value: {u'index': u'/home/svc_galaxy/new/galaxy/database/files/_metadata_files/000/metadata_77.dat', u'order_index': u'10', u'name': u'HISAT2_Accepted_Hits', u'track_color': u'#000000', u'group_name': u'Default group'} +DEBUG:root:----- End of all_datatype_dictionary processing ----- +DEBUG:root:all_datatype_ordered_dictionary keys are: [] +DEBUG:root:----- Beginning of Track adding processing ----- +DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/904/dataset_1272_files/myHub/Dbia3/groups.txt the group Default group +DEBUG:root:We just added track HISAT2_Accepted_Hits.bam (in group default_group) +DEBUG:root:----- End of Track adding processing ----- +DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/bam.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bam/bam.html Thu Dec 29 17:13:44 2016 -0500 @@ -0,0 +1,73 @@ + + + +

+ The following has been generated by Hub Archive Creator: +

+ + + + + + diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/inputs/HISAT2_Accepted_Hits.bai Binary file test-data/bam/inputs/HISAT2_Accepted_Hits.bai has changed diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/inputs/HISAT2_Accepted_Hits.bam Binary file test-data/bam/inputs/HISAT2_Accepted_Hits.bam has changed diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3.html diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3/Dbia3.2bit Binary file test-data/bam/myHub/Dbia3/Dbia3.2bit has changed diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3/description.html diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3/groups.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bam/myHub/Dbia3/groups.txt Thu Dec 29 17:13:44 2016 -0500 @@ -0,0 +1,5 @@ +name default_group +label Default group +priority 2 +defaultIsClosed 0 + diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3/trackDb.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bam/myHub/Dbia3/trackDb.txt Thu Dec 29 17:13:44 2016 -0500 @@ -0,0 +1,11 @@ + track HISAT2_Accepted_Hits.bam + longLabel HISAT2 Accepted Hits.bam + shortLabel HISAT2 Accepted + bigDataUrl tracks/HISAT2_Accepted_Hits.bam + type bam + visibility pack + thickDrawItem off + priority 10 + color 0,0,0 + group default_group + diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam Binary file test-data/bam/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam has changed diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam.bai Binary file test-data/bam/myHub/Dbia3/tracks/HISAT2_Accepted_Hits.bam.bai has changed diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/genomes.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bam/myHub/genomes.txt Thu Dec 29 17:13:44 2016 -0500 @@ -0,0 +1,10 @@ +genome Dbia3 +trackDb Dbia3/trackDb.txt +groups Dbia3/groups.txt +description Dbia3 +twoBitPath Dbia3/Dbia3.2bit +organism Dbia3 +defaultPos contig25 +orderKey 4500 +scientificName Dbia3 +htmlPath Dbia3/description.html diff -r 40ded0b51204 -r 1e33b2bd8443 test-data/bam/myHub/hub.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bam/myHub/hub.txt Thu Dec 29 17:13:44 2016 -0500 @@ -0,0 +1,6 @@ +hub gonrampDbia3 +shortLabel Dbia3 +longLabel Dbia3 +genomesFile genomes.txt +email rmarenco@gwu.edu +descriptionUrl Dbia3.html