Mercurial > repos > yating-l > hubarchivecreator
view util/install_linux_binaries @ 7:dd1e233e16a1 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e61ffe1cf3150efe264a35e6287dc60a70d4e526
author | yating-l |
---|---|
date | Thu, 22 Dec 2016 14:21:03 -0500 |
parents | 3e0c61b52a06 |
children |
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#!/usr/bin/env bash localBinPath="/usr/local/bin/" hgDownloadURl="http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/" # Binaries needed for HAC twoBitInfo="twoBitInfo" faToTwoBit="faToTwoBit" gff3ToGenePred="gff3ToGenePred" gtfToGenePred="gtfToGenePred" genePredToBed="genePredToBed" # sort="sort" bedToBigBed="bedToBigBed" binariesArray=( ${twoBitInfo} ${faToTwoBit} ${gff3ToGenePred} ${gtfToGenePred} ${genePredToBed} ${bedToBigBed} ) # Download and install binaries for binaryName in "${binariesArray[@]}" do binaryInstallationPath="${localBinPath}/${binaryName}" sudo wget -P ${localBinPath} "${hgDownloadURl}/${binaryName}" sudo chown ${USER} ${binaryInstallationPath} sudo chmod +x ${binaryInstallationPath} done