Mercurial > repos > yating-l > hubarchivecreator

diff hubArchiveCreator.xml @ 85:a65e52152476 draft default tip

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author yating-l
date Mon, 06 Nov 2017 13:13:01 -0500
parents cb62314a6297
children
line wrap: on
line diff
--- a/hubArchiveCreator.xml	Fri Nov 03 17:08:19 2017 -0400
+++ b/hubArchiveCreator.xml	Mon Nov 06 13:13:01 2017 -0500
@@ -459,7 +459,8 @@
     </outputs>
 
     <tests>
-        <!-- Test with only the fasta file -->
+   
+       <!-- Test with only the fasta file -->
         <test>
             <param name="genome_name" value="Dbia3"/>
             <param name="fasta_file" value="common/dbia3.fa"/>
@@ -1374,9 +1375,9 @@
                 </extra_files>
                 <!-- check Trix index directory -->
                 <extra_files type="file" name="myHub/Dbia3/trix/BLAT_alignment_bigpsl.bb.ix"
-                             value="trix_index/blat_out.ix" />
+                             value="trix_index_files/blat_out.ix" />
                 <extra_files type="file" name="myHub/Dbia3/trix/BLAT_alignment_bigpsl.bb.ixx"
-                             value="trix_index/blat_out.ixx" />
+                             value="trix_index_files/blat_out.ixx" />
             </output>
         </test>
 
@@ -1424,9 +1425,9 @@
                 </extra_files>
                 <!-- check Trix index directory -->
                 <extra_files type="file" name="myHub/Dbia3/trix/BLAST_alignment_bigpsl.bb.ix"
-                             value="trix_index/blast_out.ix" />
+                             value="trix_index_files/blast_out.ix" />
                 <extra_files type="file" name="myHub/Dbia3/trix/BLAST_alignment_bigpsl.bb.ixx"
-                             value="trix_index/blast_out.ixx" />
+                             value="trix_index_files/blast_out.ixx" />
             </output>
         </test>
 
@@ -1444,7 +1445,7 @@
                         <param name="track_color" value="#000000"/>
                         <conditional name="add_trix_index">
                             <param name="add_trix_index_selector" value="yes" />
-                            <param name="trix_index" value="trix_index_files/blast_out.ix,trix_index_files/blast_out.ixx" />
+                            <param name="trix_index" value="trix_index_files/blat_out.ix,trix_index_files/blat_out.ixx" />
                             <param name="trix_id" value="name" />
                         </conditional>
                     </conditional>
@@ -1464,9 +1465,9 @@
 
                 <!-- check Trix index directory -->
                 <extra_files type="file" name="myHub/Dbia3/trix/BLAT_alignment_bigbed.bigbed.ix"
-                             value="trix_index/blat_out.ix" />
+                             value="trix_index_files/blat_out.ix" />
                 <extra_files type="file" name="myHub/Dbia3/trix/BLAT_alignment_bigbed.bigbed.ixx"
-                             value="trix_index/blat_out.ixx" />
+                             value="trix_index_files/blat_out.ixx" />
             </output>
         </test>