Mercurial > repos > yating-l > hubarchivecreator

diff bigPsl.py @ 52:c66803bff0cc draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
author yating-l
date Thu, 11 May 2017 17:21:15 -0400
parents 364b8db8de17
children b39dd0b5a166
line wrap: on
line diff
--- a/bigPsl.py	Wed Apr 12 16:51:03 2017 -0400
+++ b/bigPsl.py	Thu May 11 17:21:15 2017 -0400
@@ -21,7 +21,10 @@
         self.track_color = data_bigpsl["track_color"]
         # TODO: Think about how to avoid repetition of the group_name everywhere
         self.group_name = data_bigpsl["group_name"]
-
+        if data_bigpsl["long_label"]:
+            self.long_label = data_bigpsl["long_label"]
+        else:
+            self.long_label = self.name_bigpsl
         #sortedBedFile = tempfile.NamedTemporaryFile(suffix=".sortedBed")
 
         # Sort processing
@@ -45,7 +48,7 @@
 
         self.createTrack(file_path=trackName,
                          track_name=trackName,
-                         long_label=self.name_bigpsl, track_type='bigPsl', visibility='dense',
+                         long_label=self.long_label, track_type='bigPsl', visibility='dense',
                          priority=self.priority,
                          track_file=myBigBedFilePath,
                          track_color=self.track_color,