diff Gff3.py @ 52:c66803bff0cc draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty

--- a/Gff3.py	Wed Apr 12 16:51:03 2017 -0400
+++ b/Gff3.py	Thu May 11 17:21:15 2017 -0400
@@ -22,7 +22,10 @@
         self.track_color = data_gff3["track_color"]
         # TODO: Think about how to avoid repetition of the group_name everywhere
         self.group_name = data_gff3["group_name"]
-
+        if data_gff3["long_label"]:
+            self.long_label = data_gff3["long_label"]
+        else:
+            self.long_label = self.name_gff3
         # TODO: See if we need these temporary files as part of the generated files
         unsorted_genePred_file = tempfile.NamedTemporaryFile(bufsize=0, suffix=".genePred")
         unsorted_bigGenePred_file = tempfile.NamedTemporaryFile(bufsize=0, suffix=".unsorted.bigGenePred")
@@ -57,7 +60,7 @@
         # Create the Track Object
         self.createTrack(file_path=trackName,
                          track_name=trackName,
-                         long_label=self.name_gff3,
+                         long_label=self.long_label,
                          track_type='bigGenePred', visibility='dense',
                          priority=self.priority,
                          track_file=myBigBedFilePath,