Mercurial > repos > yating-l > hubarchivecreator
diff hubArchiveCreator.xml @ 8:be8fd2f24c60 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
| author | yating-l |
|---|---|
| date | Thu, 22 Dec 2016 15:32:27 -0500 |
| parents | dd1e233e16a1 |
| children | d5781fe7b782 |
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--- a/hubArchiveCreator.xml Thu Dec 22 14:21:03 2016 -0500 +++ b/hubArchiveCreator.xml Thu Dec 22 15:32:27 2016 -0500 @@ -111,11 +111,6 @@ #silent $prepare_json($f.formatChoice.bedChoice.BED_simple_repeats, $index_track_final, extra_data_dict) #end if - #if $f.formatChoice.bedChoice.bed_select == "bed_splice_junctions_option" - --bedSpliceJunctions $f.formatChoice.bedChoice.BED_splice_junctions - #silent $prepare_json($f.formatChoice.bedChoice.BED_splice_junctions, $index_track_final, - extra_data_dict) - #end if #end if #if $f.formatChoice.format_select == "psl" --psl $f.formatChoice.PSL @@ -211,7 +206,6 @@ <param name="bed_select" type="select" label="Bed Choice"> <option value="bed_generic" selected="true">BED Generic (bed3+)</option> <option value="bed_simple_repeats_option">BED Simple repeat (bed4+12 / simpleRepeat.as)</option> - <option value="bed_splice_junctions_option">BED Splice junctions (bed12+1 / spliceJunctions.as)</option> </param> <when value="bed_generic"> <param @@ -230,14 +224,6 @@ label="Bed Simple Repeats (Bed4+12) File" /> </when> - <when value="bed_splice_junctions_option"> - <param - format="bed" - name="BED_splice_junctions" - type="data" - label="Bed Splice Junctions (Bed12+1) File" - /> - </when> </conditional> <param name="track_color" type="color" label="Track color" value="#000000"> <sanitizer> @@ -456,7 +442,6 @@ /> </output> </test> - <!-- Test with Psl --> <test>