Mercurial > repos > yating-l > hubarchivecreator

diff bigPsl.py @ 57:b39dd0b5a166 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
author yating-l
date Fri, 30 Jun 2017 14:49:14 -0400
parents c66803bff0cc
children 5a4206366b41
line wrap: on
line diff
--- a/bigPsl.py	Fri Jun 02 17:28:01 2017 -0400
+++ b/bigPsl.py	Fri Jun 30 14:49:14 2017 -0400
@@ -21,6 +21,7 @@
         self.track_color = data_bigpsl["track_color"]
         # TODO: Think about how to avoid repetition of the group_name everywhere
         self.group_name = data_bigpsl["group_name"]
+        self.database = data_bigpsl["database"]
         if data_bigpsl["long_label"]:
             self.long_label = data_bigpsl["long_label"]
         else:
@@ -44,7 +45,8 @@
                                  bigBedFile.name,
                                  typeOption='bed12+12',
                                  tab='True',
-                                 autoSql=auto_sql_option)
+                                 autoSql=auto_sql_option,
+                                 extraIndex='name')
 
         self.createTrack(file_path=trackName,
                          track_name=trackName,
@@ -52,7 +54,8 @@
                          priority=self.priority,
                          track_file=myBigBedFilePath,
                          track_color=self.track_color,
-                         group_name=self.group_name)
+                         group_name=self.group_name,
+                         database=self.database)
 
 
         # dataURL = "tracks/%s" % trackName