Mercurial > repos > yating-l > hubarchivecreator
comparison Psl.py @ 57:b39dd0b5a166 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
| author | yating-l |
|---|---|
| date | Fri, 30 Jun 2017 14:49:14 -0400 |
| parents | c66803bff0cc |
| children | a0fc8379223c |
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| 56:04cc7c2e7b47 | 57:b39dd0b5a166 |
|---|---|
| 17 self.name_psl = data_psl["name"] | 17 self.name_psl = data_psl["name"] |
| 18 self.priority = data_psl["order_index"] | 18 self.priority = data_psl["order_index"] |
| 19 self.track_color = data_psl["track_color"] | 19 self.track_color = data_psl["track_color"] |
| 20 # TODO: Think about how to avoid repetition of the group_name everywhere | 20 # TODO: Think about how to avoid repetition of the group_name everywhere |
| 21 self.group_name = data_psl["group_name"] | 21 self.group_name = data_psl["group_name"] |
| 22 self.database = data_psl["database"] | |
| 22 if data_psl["long_label"]: | 23 if data_psl["long_label"]: |
| 23 self.long_label = data_psl["long_label"] | 24 self.long_label = data_psl["long_label"] |
| 24 else: | 25 else: |
| 25 self.long_label = self.name_psl | 26 self.long_label = self.name_psl |
| 26 # Temporary files | 27 # Temporary files |
| 56 long_label=self.long_label, | 57 long_label=self.long_label, |
| 57 track_type='bigPsl', visibility='dense', | 58 track_type='bigPsl', visibility='dense', |
| 58 priority=self.priority, | 59 priority=self.priority, |
| 59 track_file=my_big_psl_file_path, | 60 track_file=my_big_psl_file_path, |
| 60 track_color=self.track_color, | 61 track_color=self.track_color, |
| 61 group_name=self.group_name) | 62 group_name=self.group_name, |
| 63 database=self.database) | |
| 62 | 64 |
| 63 print("- BigPsl %s created" % self.name_psl) | 65 print("- BigPsl %s created" % self.name_psl) |