Mercurial > repos > yating-l > hubarchivecreator
comparison Gff3.py @ 57:b39dd0b5a166 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
| author | yating-l |
|---|---|
| date | Fri, 30 Jun 2017 14:49:14 -0400 |
| parents | c66803bff0cc |
| children | a0fc8379223c |
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| 56:04cc7c2e7b47 | 57:b39dd0b5a166 |
|---|---|
| 20 self.name_gff3 = data_gff3["name"] | 20 self.name_gff3 = data_gff3["name"] |
| 21 self.priority = data_gff3["order_index"] | 21 self.priority = data_gff3["order_index"] |
| 22 self.track_color = data_gff3["track_color"] | 22 self.track_color = data_gff3["track_color"] |
| 23 # TODO: Think about how to avoid repetition of the group_name everywhere | 23 # TODO: Think about how to avoid repetition of the group_name everywhere |
| 24 self.group_name = data_gff3["group_name"] | 24 self.group_name = data_gff3["group_name"] |
| 25 self.database = data_gff3["database"] | |
| 25 if data_gff3["long_label"]: | 26 if data_gff3["long_label"]: |
| 26 self.long_label = data_gff3["long_label"] | 27 self.long_label = data_gff3["long_label"] |
| 27 else: | 28 else: |
| 28 self.long_label = self.name_gff3 | 29 self.long_label = self.name_gff3 |
| 29 # TODO: See if we need these temporary files as part of the generated files | 30 # TODO: See if we need these temporary files as part of the generated files |
| 63 long_label=self.long_label, | 64 long_label=self.long_label, |
| 64 track_type='bigGenePred', visibility='dense', | 65 track_type='bigGenePred', visibility='dense', |
| 65 priority=self.priority, | 66 priority=self.priority, |
| 66 track_file=myBigBedFilePath, | 67 track_file=myBigBedFilePath, |
| 67 track_color=self.track_color, | 68 track_color=self.track_color, |
| 68 group_name=self.group_name) | 69 group_name=self.group_name, |
| 70 database=self.database) | |
| 69 | 71 |
| 70 print("- Gff3 %s created" % self.name_gff3) | 72 print("- Gff3 %s created" % self.name_gff3) |