Mercurial > repos > yating-l > hubarchivecreator
comparison BigWig.py @ 57:b39dd0b5a166 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
| author | yating-l |
|---|---|
| date | Fri, 30 Jun 2017 14:49:14 -0400 |
| parents | c66803bff0cc |
| children |
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| 56:04cc7c2e7b47 | 57:b39dd0b5a166 |
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| 21 self.name_bigwig = data_bigwig["name"] | 21 self.name_bigwig = data_bigwig["name"] |
| 22 self.priority = data_bigwig["order_index"] | 22 self.priority = data_bigwig["order_index"] |
| 23 self.track_color = data_bigwig["track_color"] | 23 self.track_color = data_bigwig["track_color"] |
| 24 # TODO: Think about how to avoid repetition of the group_name everywhere | 24 # TODO: Think about how to avoid repetition of the group_name everywhere |
| 25 self.group_name = data_bigwig["group_name"] | 25 self.group_name = data_bigwig["group_name"] |
| 26 self.database = data_bigwig["database"] | |
| 26 if data_bigwig["long_label"]: | 27 if data_bigwig["long_label"]: |
| 27 self.long_label = data_bigwig["long_label"] | 28 self.long_label = data_bigwig["long_label"] |
| 28 else: | 29 else: |
| 29 self.long_label = self.name_bigwig | 30 self.long_label = self.name_bigwig |
| 30 #print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig ) | 31 #print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig ) |
| 41 track_type=self.determine_track_type(myBigWigFilePath), | 42 track_type=self.determine_track_type(myBigWigFilePath), |
| 42 visibility='full', | 43 visibility='full', |
| 43 priority=self.priority, | 44 priority=self.priority, |
| 44 track_file=myBigWigFilePath, | 45 track_file=myBigWigFilePath, |
| 45 track_color=self.track_color, | 46 track_color=self.track_color, |
| 46 group_name=self.group_name) | 47 group_name=self.group_name, |
| 48 database = self.database) | |
| 47 | 49 |
| 48 print("- BigWig %s created" % self.name_bigwig) | 50 print("- BigWig %s created" % self.name_bigwig) |
| 49 #print("- %s created in %s" % (trackName, myBigWigFilePath)) | 51 #print("- %s created in %s" % (trackName, myBigWigFilePath)) |
| 50 | 52 |
| 51 def determine_track_type(self, bw_file): | 53 def determine_track_type(self, bw_file): |