Mercurial > repos > yating-l > hubarchivecreator
comparison Bed.py @ 57:b39dd0b5a166 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
author | yating-l |
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date | Fri, 30 Jun 2017 14:49:14 -0400 |
parents | c66803bff0cc |
children | a0fc8379223c |
comparison
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56:04cc7c2e7b47 | 57:b39dd0b5a166 |
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24 self.name_bed_generic = self.data_bed_generic["name"] | 24 self.name_bed_generic = self.data_bed_generic["name"] |
25 self.priority = self.data_bed_generic["order_index"] | 25 self.priority = self.data_bed_generic["order_index"] |
26 self.track_color = self.data_bed_generic["track_color"] | 26 self.track_color = self.data_bed_generic["track_color"] |
27 # TODO: Think about how to avoid repetition of the group_name everywhere | 27 # TODO: Think about how to avoid repetition of the group_name everywhere |
28 self.group_name = self.data_bed_generic["group_name"] | 28 self.group_name = self.data_bed_generic["group_name"] |
29 self.database = self.data_bed_generic["database"] | |
29 if self.data_bed_generic["long_label"]: | 30 if self.data_bed_generic["long_label"]: |
30 self.long_label = self.data_bed_generic["long_label"] | 31 self.long_label = self.data_bed_generic["long_label"] |
31 else: | 32 else: |
32 self.long_label = self.name_bed_generic | 33 self.long_label = self.name_bed_generic |
33 | 34 |
49 track_name=trackName, | 50 track_name=trackName, |
50 long_label=self.long_label, track_type='bigBed', visibility='dense', | 51 long_label=self.long_label, track_type='bigBed', visibility='dense', |
51 priority=self.priority, | 52 priority=self.priority, |
52 track_file=myBigBedFilePath, | 53 track_file=myBigBedFilePath, |
53 track_color=self.track_color, | 54 track_color=self.track_color, |
54 group_name=self.group_name) | 55 group_name=self.group_name, |
56 database=self.database) | |
55 | 57 |
56 # dataURL = "tracks/%s" % trackName | 58 # dataURL = "tracks/%s" % trackName |
57 # | 59 # |
58 # trackDb = TrackDb( | 60 # trackDb = TrackDb( |
59 # trackName=trackName, | 61 # trackName=trackName, |