comparison Psl.py @ 58:a0fc8379223c draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697
author yating-l
date Fri, 30 Jun 2017 15:44:17 -0400
parents b39dd0b5a166
children
comparison
equal deleted inserted replaced
57:b39dd0b5a166 58:a0fc8379223c
47 subtools.bedToBigBed(sorted_bed_formatted_psl_file.name, 47 subtools.bedToBigBed(sorted_bed_formatted_psl_file.name,
48 self.chromSizesFile.name, 48 self.chromSizesFile.name,
49 big_psl_file.name, 49 big_psl_file.name,
50 autoSql=auto_sql_option, 50 autoSql=auto_sql_option,
51 typeOption='bed12+12', 51 typeOption='bed12+12',
52 tab=True) 52 tab=True,
53 extraIndex='name')
53 54
54 # Create the Track Object 55 # Create the Track Object
55 self.createTrack(file_path=trackName, 56 self.createTrack(file_path=trackName,
56 track_name=trackName, 57 track_name=trackName,
57 long_label=self.long_label, 58 long_label=self.long_label,