comparison BedSpliceJunctions.py @ 58:a0fc8379223c draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697

57:b39dd0b5a166

        with open(myBigBedFilePath, 'w') as bigBedFile:
            subtools.bedToBigBed(sortedBedFile.name,
                                 self.chromSizesFile.name,
                                 bigBedFile.name,
                                 typeOption='bed12+1',
                                 autoSql=auto_sql_option
                                 )

        # Create the Track Object
        self.createTrack(file_path=trackName,
                         track_name=trackName,

58:a0fc8379223c

        with open(myBigBedFilePath, 'w') as bigBedFile:
            subtools.bedToBigBed(sortedBedFile.name,
                                 self.chromSizesFile.name,
                                 bigBedFile.name,
                                 typeOption='bed12+1',
                                 autoSql=auto_sql_option,
                                 extraIndex='name'
                                 )

        # Create the Track Object
        self.createTrack(file_path=trackName,
                         track_name=trackName,