Mercurial > repos > yating-l > hubarchivecreator
comparison Bed.py @ 58:a0fc8379223c draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697
| author | yating-l |
|---|---|
| date | Fri, 30 Jun 2017 15:44:17 -0400 |
| parents | b39dd0b5a166 |
| children | 4c4e8941feda |
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| 57:b39dd0b5a166 | 58:a0fc8379223c |
|---|---|
| 41 | 41 |
| 42 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName) | 42 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName) |
| 43 with open(myBigBedFilePath, 'w') as self.bigBedFile: | 43 with open(myBigBedFilePath, 'w') as self.bigBedFile: |
| 44 subtools.bedToBigBed(self.sortedBedFile.name, | 44 subtools.bedToBigBed(self.sortedBedFile.name, |
| 45 self.chromSizesFile.name, | 45 self.chromSizesFile.name, |
| 46 self.bigBedFile.name) | 46 self.bigBedFile.name, |
| 47 extraIndex='name' | |
| 48 ) | |
| 47 | 49 |
| 48 # Create the Track Object | 50 # Create the Track Object |
| 49 self.createTrack(file_path=trackName, | 51 self.createTrack(file_path=trackName, |
| 50 track_name=trackName, | 52 track_name=trackName, |
| 51 long_label=self.long_label, track_type='bigBed', visibility='dense', | 53 long_label=self.long_label, track_type='bigBed', visibility='dense', |