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comparison spliceJunctions.as @ 3:44577d6784b7 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
author yating-l
date Wed, 21 Dec 2016 11:18:27 -0500
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2:4ced8f116509 3:44577d6784b7
1 table spliceJunctions
2 "Predicted splice junctions"
3 (
4 string chrom; "Reference sequence chromosome or scaffold"
5 uint chromStart; "Start position in chromosome"
6 uint chromEnd; "End position in chromosome"
7 string name; "Name of item"
8 uint score; "Score from 0-1000"
9 char[1] strand; "+ or -"
10 uint thickStart; "Start of where display should be thick (start codon)"
11 uint thickEnd; "End of where display should be thick (stop codon)"
12 uint reserved; "Used as itemRgb as of 2004-11-22"
13 int blockCount; "Number of blocks"
14 int[blockCount] blockSizes; "Comma separated list of block sizes"
15 int[blockCount] chromStarts; "Start positions relative to chromStart"
16 uint junctionScore; "Number of reads supporting the splice junction"
17 )