comparison TrackHub.py @ 70:39a32cb31623 draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty

69:ffbec960dc34

from mako.lookup import TemplateLookup

# Internal dependencies
from datatypes.Datatype import Datatype
from util import subtools




class TrackHub(object):

        # Else append the new track
        # TODO: Get this out of the function
        trackDbTxtFilePath = os.path.join(self.mySpecieFolderPath, 'trackDb.txt')
        # Append to trackDbTxtFilePath the trackDbTemplate populate with the newTrack object
        with open(trackDbTxtFilePath, 'a+') as trackDbFile:
            trackDbs = [trackDbObject]

            # TODO: The addGroup does not belong here. Move it when the group becomes more than just a label
            # Add the group as well, if exists in trackDbObject
            self.addGroup(trackDbObject["group"])

            htmlMakoRendered = self.trackDbTemplate.render(
                trackDbs=trackDbs
            )
            trackDbFile.write(htmlMakoRendered)

70:39a32cb31623

from mako.lookup import TemplateLookup

# Internal dependencies
from datatypes.Datatype import Datatype
from util import subtools
from util import santitizer




class TrackHub(object):

        # Else append the new track
        # TODO: Get this out of the function
        trackDbTxtFilePath = os.path.join(self.mySpecieFolderPath, 'trackDb.txt')
        # Append to trackDbTxtFilePath the trackDbTemplate populate with the newTrack object
        with open(trackDbTxtFilePath, 'a+') as trackDbFile:
            group_name = trackDbObject["group"]
            trackDbObject["group"] = santitizer.sanitize_group_name(trackDbObject["group"])
            trackDbs = [trackDbObject]
            # TODO: The addGroup does not belong here. Move it when the group becomes more than just a label
            # Add the group as well, if exists in trackDbObject
            self.addGroup(group_name)

            htmlMakoRendered = self.trackDbTemplate.render(
                trackDbs=trackDbs
            )
            trackDbFile.write(htmlMakoRendered)