Mercurial > repos > yating-l > hubarchivecreator

annotate test-data/bed_splice_junctions/__main__.log @ 85:a65e52152476 draft default tip

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author yating-l
date Mon, 06 Nov 2017 13:13:01 -0500
parents 4ca7cbf2d9b8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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1 DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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2
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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3 DEBUG:root:Calling faToTwoBit:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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4 DEBUG:root:---------
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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5 DEBUG:root:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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6 DEBUG:root:Calling twoBitInfo:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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7 DEBUG:root:---------
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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8 DEBUG:root:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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9 DEBUG:root:Calling sort:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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10 DEBUG:root:---------
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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11 DEBUG:root:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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12 DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_160.dat
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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13 DEBUG:root:data_value: {u'long_label': u'Splice junctions', u'name': u'regtools_junctions', u'database': u'', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'10'}
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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14 DEBUG:root:Calling sort:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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15 DEBUG:root:---------
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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16 DEBUG:root:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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17 DEBUG:root:sorted_bed_file_name: /tmp/tmpNmrPuS.sortedBed
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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18 DEBUG:root:chrom_sizes_file_name: /tmp/tmpKM2jLb.chrom.sizes
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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19 DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/175/dataset_201_files/myHub/Dbia3/tracks/regtools_junctions.bb
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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20 DEBUG:root:typeOption: bed12+1
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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21 DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/spliceJunctions.as
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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22 DEBUG:root:tab option: False
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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23 DEBUG:root:Calling bedToBigBed:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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24 DEBUG:root:---------
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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25 DEBUG:root:
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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26 DEBUG:root:----- End of all_datatype_dictionary processing -----
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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27 DEBUG:root:all_datatype_ordered_dictionary keys are: [<BedSpliceJunctions.BedSpliceJunctions object at 0x7f3fc157f690>]
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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28 DEBUG:root:----- Beginning of Track adding processing -----
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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29 DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/175/dataset_201_files/myHub/Dbia3/groups.txt the group Default group
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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30 DEBUG:root:We just added track gonramp_regtools_junctions_bb (in group default_group)
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
parents:
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31 DEBUG:root:----- End of Track adding processing -----
4ca7cbf2d9b8 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 159730602ff500b59aefc7080fb49b726c88d655-dirty
yating-l
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32 DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####