Mercurial > repos > yating-l > hubarchivecreator

annotate spliceJunctions.as @ 7:dd1e233e16a1 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e61ffe1cf3150efe264a35e6287dc60a70d4e526
author yating-l
date Thu, 22 Dec 2016 14:21:03 -0500
parents 44577d6784b7
children
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44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
1 table spliceJunctions
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
2 "Predicted splice junctions"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
3 (
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
4 string chrom; "Reference sequence chromosome or scaffold"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
5 uint chromStart; "Start position in chromosome"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
6 uint chromEnd; "End position in chromosome"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
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7 string name; "Name of item"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
8 uint score; "Score from 0-1000"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
9 char[1] strand; "+ or -"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
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10 uint thickStart; "Start of where display should be thick (start codon)"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
11 uint thickEnd; "End of where display should be thick (stop codon)"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
12 uint reserved; "Used as itemRgb as of 2004-11-22"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
13 int blockCount; "Number of blocks"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
14 int[blockCount] blockSizes; "Comma separated list of block sizes"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
15 int[blockCount] chromStarts; "Start positions relative to chromStart"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
16 uint junctionScore; "Number of reads supporting the splice junction"
44577d6784b7 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit e2db8aa3672f1222b415716054bfb3c5ccd132a1-dirty
yating-l
parents:
diff changeset
17 )