hubarchivecreator: doc/_build/html/_static/searchtools.js annotate

annotate doc/_build/html/_static/searchtools.js @ 2:4ced8f116509 draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty

author	yating-l
date	Tue, 22 Nov 2016 17:13:18 -0500
parents
children

rev	line source
2 4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	1 /*
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	2 * searchtools.js_t
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	3 * ~~~~~~~~~~~~~~~~
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	4 *
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	5 * Sphinx JavaScript utilities for the full-text search.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	6 *
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	7 * :copyright: Copyright 2007-2016 by the Sphinx team, see AUTHORS.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	8 * :license: BSD, see LICENSE for details.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	9 *
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	10 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	11
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	12
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	13 /* Non-minified version JS is _stemmer.js if file is provided */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	14 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	15 * Porter Stemmer
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	16 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	17 var Stemmer = function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	18
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	19 var step2list = {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	20 ational: 'ate',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	21 tional: 'tion',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	22 enci: 'ence',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	23 anci: 'ance',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	24 izer: 'ize',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	25 bli: 'ble',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	26 alli: 'al',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	27 entli: 'ent',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	28 eli: 'e',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	29 ousli: 'ous',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	30 ization: 'ize',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	31 ation: 'ate',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	32 ator: 'ate',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	33 alism: 'al',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	34 iveness: 'ive',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	35 fulness: 'ful',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	36 ousness: 'ous',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	37 aliti: 'al',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	38 iviti: 'ive',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	39 biliti: 'ble',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	40 logi: 'log'
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	41 };
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	42
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	43 var step3list = {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	44 icate: 'ic',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	45 ative: '',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	46 alize: 'al',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	47 iciti: 'ic',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	48 ical: 'ic',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	49 ful: '',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	50 ness: ''
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	51 };
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	52
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	53 var c = "[^aeiou]"; // consonant
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	54 var v = "[aeiouy]"; // vowel
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	55 var C = c + "[^aeiouy]*"; // consonant sequence
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	56 var V = v + "[aeiou]*"; // vowel sequence
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	57
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	58 var mgr0 = "^(" + C + ")?" + V + C; // [C]VC... is m>0
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	59 var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$"; // [C]VC[V] is m=1
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	60 var mgr1 = "^(" + C + ")?" + V + C + V + C; // [C]VCVC... is m>1
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	61 var s_v = "^(" + C + ")?" + v; // vowel in stem
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	62
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	63 this.stemWord = function (w) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	64 var stem;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	65 var suffix;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	66 var firstch;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	67 var origword = w;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	68
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	69 if (w.length < 3)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	70 return w;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	71
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	72 var re;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	73 var re2;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	74 var re3;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	75 var re4;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	76
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	77 firstch = w.substr(0,1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	78 if (firstch == "y")
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	79 w = firstch.toUpperCase() + w.substr(1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	80
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	81 // Step 1a
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	82 re = /^(.+?)(ss\|i)es$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	83 re2 = /^(.+?)([^s])s$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	84
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	85 if (re.test(w))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	86 w = w.replace(re,"$1$2");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	87 else if (re2.test(w))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	88 w = w.replace(re2,"$1$2");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	89
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	90 // Step 1b
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	91 re = /^(.+?)eed$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	92 re2 = /^(.+?)(ed\|ing)$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	93 if (re.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	94 var fp = re.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	95 re = new RegExp(mgr0);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	96 if (re.test(fp[1])) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	97 re = /.$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	98 w = w.replace(re,"");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	99 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	100 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	101 else if (re2.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	102 var fp = re2.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	103 stem = fp[1];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	104 re2 = new RegExp(s_v);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	105 if (re2.test(stem)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	106 w = stem;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	107 re2 = /(at\|bl\|iz)$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	108 re3 = new RegExp("([^aeiouylsz])\\1$");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	109 re4 = new RegExp("^" + C + v + "[^aeiouwxy]$");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	110 if (re2.test(w))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	111 w = w + "e";
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	112 else if (re3.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	113 re = /.$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	114 w = w.replace(re,"");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	115 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	116 else if (re4.test(w))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	117 w = w + "e";
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	118 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	119 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	120
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	121 // Step 1c
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	122 re = /^(.+?)y$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	123 if (re.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	124 var fp = re.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	125 stem = fp[1];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	126 re = new RegExp(s_v);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	127 if (re.test(stem))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	128 w = stem + "i";
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	129 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	130
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	131 // Step 2
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	132 re = /^(.+?)(ational\|tional\|enci\|anci\|izer\|bli\|alli\|entli\|eli\|ousli\|ization\|ation\|ator\|alism\|iveness\|fulness\|ousness\|aliti\|iviti\|biliti\|logi)$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	133 if (re.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	134 var fp = re.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	135 stem = fp[1];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	136 suffix = fp[2];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	137 re = new RegExp(mgr0);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	138 if (re.test(stem))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	139 w = stem + step2list[suffix];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	140 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	141
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	142 // Step 3
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	143 re = /^(.+?)(icate\|ative\|alize\|iciti\|ical\|ful\|ness)$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	144 if (re.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	145 var fp = re.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	146 stem = fp[1];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	147 suffix = fp[2];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	148 re = new RegExp(mgr0);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	149 if (re.test(stem))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	150 w = stem + step3list[suffix];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	151 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	152
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	153 // Step 4
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	154 re = /^(.+?)(al\|ance\|ence\|er\|ic\|able\|ible\|ant\|ement\|ment\|ent\|ou\|ism\|ate\|iti\|ous\|ive\|ize)$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	155 re2 = /^(.+?)(s\|t)(ion)$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	156 if (re.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	157 var fp = re.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	158 stem = fp[1];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	159 re = new RegExp(mgr1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	160 if (re.test(stem))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	161 w = stem;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	162 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	163 else if (re2.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	164 var fp = re2.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	165 stem = fp[1] + fp[2];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	166 re2 = new RegExp(mgr1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	167 if (re2.test(stem))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	168 w = stem;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	169 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	170
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	171 // Step 5
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	172 re = /^(.+?)e$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	173 if (re.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	174 var fp = re.exec(w);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	175 stem = fp[1];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	176 re = new RegExp(mgr1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	177 re2 = new RegExp(meq1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	178 re3 = new RegExp("^" + C + v + "[^aeiouwxy]$");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	179 if (re.test(stem) \|\| (re2.test(stem) && !(re3.test(stem))))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	180 w = stem;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	181 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	182 re = /ll$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	183 re2 = new RegExp(mgr1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	184 if (re.test(w) && re2.test(w)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	185 re = /.$/;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	186 w = w.replace(re,"");
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	187 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	188
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	189 // and turn initial Y back to y
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	190 if (firstch == "y")
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	191 w = firstch.toLowerCase() + w.substr(1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	192 return w;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	193 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	194 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	195
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	196
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	197
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	198 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	199 * Simple result scoring code.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	200 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	201 var Scorer = {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	202 // Implement the following function to further tweak the score for each result
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	203 // The function takes a result array [filename, title, anchor, descr, score]
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	204 // and returns the new score.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	205 /*
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	206 score: function(result) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	207 return result[4];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	208 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	209 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	210
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	211 // query matches the full name of an object
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	212 objNameMatch: 11,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	213 // or matches in the last dotted part of the object name
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	214 objPartialMatch: 6,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	215 // Additive scores depending on the priority of the object
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	216 objPrio: {0: 15, // used to be importantResults
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	217 1: 5, // used to be objectResults
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	218 2: -5}, // used to be unimportantResults
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	219 // Used when the priority is not in the mapping.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	220 objPrioDefault: 0,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	221
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	222 // query found in title
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	223 title: 15,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	224 // query found in terms
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	225 term: 5
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	226 };
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	227
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	228
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	229 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	230 * Search Module
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	231 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	232 var Search = {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	233
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	234 _index : null,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	235 _queued_query : null,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	236 _pulse_status : -1,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	237
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	238 init : function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	239 var params = $.getQueryParameters();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	240 if (params.q) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	241 var query = params.q[0];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	242 $('input[name="q"]')[0].value = query;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	243 this.performSearch(query);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	244 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	245 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	246
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	247 loadIndex : function(url) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	248 $.ajax({type: "GET", url: url, data: null,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	249 dataType: "script", cache: true,
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	250 complete: function(jqxhr, textstatus) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	251 if (textstatus != "success") {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	252 document.getElementById("searchindexloader").src = url;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	253 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	254 }});
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	255 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	256
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	257 setIndex : function(index) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	258 var q;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	259 this._index = index;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	260 if ((q = this._queued_query) !== null) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	261 this._queued_query = null;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	262 Search.query(q);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	263 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	264 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	265
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	266 hasIndex : function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	267 return this._index !== null;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	268 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	269
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	270 deferQuery : function(query) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	271 this._queued_query = query;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	272 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	273
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	274 stopPulse : function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	275 this._pulse_status = 0;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	276 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	277
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	278 startPulse : function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	279 if (this._pulse_status >= 0)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	280 return;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	281 function pulse() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	282 var i;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	283 Search._pulse_status = (Search._pulse_status + 1) % 4;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	284 var dotString = '';
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	285 for (i = 0; i < Search._pulse_status; i++)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	286 dotString += '.';
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	287 Search.dots.text(dotString);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	288 if (Search._pulse_status > -1)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	289 window.setTimeout(pulse, 500);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	290 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	291 pulse();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	292 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	293
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	294 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	295 * perform a search for something (or wait until index is loaded)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	296 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	297 performSearch : function(query) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	298 // create the required interface elements
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	299 this.out = $('#search-results');
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	300 this.title = $('<h2>' + _('Searching') + '</h2>').appendTo(this.out);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	301 this.dots = $('<span></span>').appendTo(this.title);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	302 this.status = $('<p style="display: none"></p>').appendTo(this.out);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	303 this.output = $('<ul class="search"/>').appendTo(this.out);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	304
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	305 $('#search-progress').text(_('Preparing search...'));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	306 this.startPulse();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	307
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	308 // index already loaded, the browser was quick!
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	309 if (this.hasIndex())
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	310 this.query(query);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	311 else
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	312 this.deferQuery(query);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	313 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	314
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	315 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	316 * execute search (requires search index to be loaded)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	317 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	318 query : function(query) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	319 var i;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	320 var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	321
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	322 // stem the searchterms and add them to the correct list
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	323 var stemmer = new Stemmer();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	324 var searchterms = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	325 var excluded = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	326 var hlterms = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	327 var tmp = query.split(/\W+/);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	328 var objectterms = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	329 for (i = 0; i < tmp.length; i++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	330 if (tmp[i] !== "") {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	331 objectterms.push(tmp[i].toLowerCase());
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	332 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	333
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	334 if ($u.indexOf(stopwords, tmp[i].toLowerCase()) != -1 \|\| tmp[i].match(/^\d+$/) \|\|
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	335 tmp[i] === "") {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	336 // skip this "word"
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	337 continue;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	338 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	339 // stem the word
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	340 var word = stemmer.stemWord(tmp[i].toLowerCase());
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	341 var toAppend;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	342 // select the correct list
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	343 if (word[0] == '-') {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	344 toAppend = excluded;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	345 word = word.substr(1);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	346 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	347 else {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	348 toAppend = searchterms;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	349 hlterms.push(tmp[i].toLowerCase());
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	350 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	351 // only add if not already in the list
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	352 if (!$u.contains(toAppend, word))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	353 toAppend.push(word);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	354 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	355 var highlightstring = '?highlight=' + $.urlencode(hlterms.join(" "));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	356
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	357 // console.debug('SEARCH: searching for:');
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	358 // console.info('required: ', searchterms);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	359 // console.info('excluded: ', excluded);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	360
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	361 // prepare search
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	362 var terms = this._index.terms;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	363 var titleterms = this._index.titleterms;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	364
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	365 // array of [filename, title, anchor, descr, score]
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	366 var results = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	367 $('#search-progress').empty();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	368
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	369 // lookup as object
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	370 for (i = 0; i < objectterms.length; i++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	371 var others = [].concat(objectterms.slice(0, i),
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	372 objectterms.slice(i+1, objectterms.length));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	373 results = results.concat(this.performObjectSearch(objectterms[i], others));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	374 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	375
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	376 // lookup as search terms in fulltext
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	377 results = results.concat(this.performTermsSearch(searchterms, excluded, terms, titleterms));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	378
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	379 // let the scorer override scores with a custom scoring function
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	380 if (Scorer.score) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	381 for (i = 0; i < results.length; i++)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	382 results[i][4] = Scorer.score(results[i]);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	383 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	384
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	385 // now sort the results by score (in opposite order of appearance, since the
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	386 // display function below uses pop() to retrieve items) and then
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	387 // alphabetically
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	388 results.sort(function(a, b) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	389 var left = a[4];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	390 var right = b[4];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	391 if (left > right) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	392 return 1;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	393 } else if (left < right) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	394 return -1;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	395 } else {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	396 // same score: sort alphabetically
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	397 left = a[1].toLowerCase();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	398 right = b[1].toLowerCase();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	399 return (left > right) ? -1 : ((left < right) ? 1 : 0);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	400 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	401 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	402
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	403 // for debugging
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	404 //Search.lastresults = results.slice(); // a copy
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	405 //console.info('search results:', Search.lastresults);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	406
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	407 // print the results
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	408 var resultCount = results.length;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	409 function displayNextItem() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	410 // results left, load the summary and display it
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	411 if (results.length) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	412 var item = results.pop();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	413 var listItem = $('<li style="display:none"></li>');
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	414 if (DOCUMENTATION_OPTIONS.FILE_SUFFIX === '') {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	415 // dirhtml builder
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	416 var dirname = item[0] + '/';
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	417 if (dirname.match(/\/index\/$/)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	418 dirname = dirname.substring(0, dirname.length-6);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	419 } else if (dirname == 'index/') {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	420 dirname = '';
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	421 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	422 listItem.append($('<a/>').attr('href',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	423 DOCUMENTATION_OPTIONS.URL_ROOT + dirname +
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	424 highlightstring + item[2]).html(item[1]));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	425 } else {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	426 // normal html builders
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	427 listItem.append($('<a/>').attr('href',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	428 item[0] + DOCUMENTATION_OPTIONS.FILE_SUFFIX +
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	429 highlightstring + item[2]).html(item[1]));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	430 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	431 if (item[3]) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	432 listItem.append($('<span> (' + item[3] + ')</span>'));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	433 Search.output.append(listItem);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	434 listItem.slideDown(5, function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	435 displayNextItem();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	436 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	437 } else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	438 $.ajax({url: DOCUMENTATION_OPTIONS.URL_ROOT + '_sources/' + item[0] + '.txt',
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	439 dataType: "text",
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	440 complete: function(jqxhr, textstatus) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	441 var data = jqxhr.responseText;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	442 if (data !== '' && data !== undefined) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	443 listItem.append(Search.makeSearchSummary(data, searchterms, hlterms));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	444 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	445 Search.output.append(listItem);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	446 listItem.slideDown(5, function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	447 displayNextItem();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	448 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	449 }});
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	450 } else {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	451 // no source available, just display title
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	452 Search.output.append(listItem);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	453 listItem.slideDown(5, function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	454 displayNextItem();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	455 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	456 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	457 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	458 // search finished, update title and status message
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	459 else {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	460 Search.stopPulse();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	461 Search.title.text(_('Search Results'));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	462 if (!resultCount)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	463 Search.status.text(_('Your search did not match any documents. Please make sure that all words are spelled correctly and that you\'ve selected enough categories.'));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	464 else
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	465 Search.status.text(_('Search finished, found %s page(s) matching the search query.').replace('%s', resultCount));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	466 Search.status.fadeIn(500);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	467 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	468 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	469 displayNextItem();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	470 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	471
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	472 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	473 * search for object names
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	474 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	475 performObjectSearch : function(object, otherterms) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	476 var filenames = this._index.filenames;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	477 var objects = this._index.objects;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	478 var objnames = this._index.objnames;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	479 var titles = this._index.titles;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	480
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	481 var i;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	482 var results = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	483
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	484 for (var prefix in objects) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	485 for (var name in objects[prefix]) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	486 var fullname = (prefix ? prefix + '.' : '') + name;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	487 if (fullname.toLowerCase().indexOf(object) > -1) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	488 var score = 0;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	489 var parts = fullname.split('.');
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	490 // check for different match types: exact matches of full name or
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	491 // "last name" (i.e. last dotted part)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	492 if (fullname == object \|\| parts[parts.length - 1] == object) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	493 score += Scorer.objNameMatch;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	494 // matches in last name
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	495 } else if (parts[parts.length - 1].indexOf(object) > -1) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	496 score += Scorer.objPartialMatch;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	497 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	498 var match = objects[prefix][name];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	499 var objname = objnames[match[1]][2];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	500 var title = titles[match[0]];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	501 // If more than one term searched for, we require other words to be
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	502 // found in the name/title/description
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	503 if (otherterms.length > 0) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	504 var haystack = (prefix + ' ' + name + ' ' +
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	505 objname + ' ' + title).toLowerCase();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	506 var allfound = true;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	507 for (i = 0; i < otherterms.length; i++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	508 if (haystack.indexOf(otherterms[i]) == -1) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	509 allfound = false;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	510 break;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	511 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	512 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	513 if (!allfound) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	514 continue;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	515 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	516 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	517 var descr = objname + _(', in ') + title;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	518
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	519 var anchor = match[3];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	520 if (anchor === '')
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	521 anchor = fullname;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	522 else if (anchor == '-')
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	523 anchor = objnames[match[1]][1] + '-' + fullname;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	524 // add custom score for some objects according to scorer
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	525 if (Scorer.objPrio.hasOwnProperty(match[2])) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	526 score += Scorer.objPrio[match[2]];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	527 } else {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	528 score += Scorer.objPrioDefault;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	529 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	530 results.push([filenames[match[0]], fullname, '#'+anchor, descr, score]);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	531 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	532 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	533 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	534
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	535 return results;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	536 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	537
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	538 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	539 * search for full-text terms in the index
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	540 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	541 performTermsSearch : function(searchterms, excluded, terms, titleterms) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	542 var filenames = this._index.filenames;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	543 var titles = this._index.titles;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	544
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	545 var i, j, file;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	546 var fileMap = {};
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	547 var scoreMap = {};
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	548 var results = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	549
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	550 // perform the search on the required terms
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	551 for (i = 0; i < searchterms.length; i++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	552 var word = searchterms[i];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	553 var files = [];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	554 var _o = [
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	555 {files: terms[word], score: Scorer.term},
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	556 {files: titleterms[word], score: Scorer.title}
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	557 ];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	558
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	559 // no match but word was a required one
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	560 if ($u.every(_o, function(o){return o.files === undefined;})) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	561 break;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	562 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	563 // found search word in contents
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	564 $u.each(_o, function(o) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	565 var _files = o.files;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	566 if (_files === undefined)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	567 return
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	568
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	569 if (_files.length === undefined)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	570 _files = [_files];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	571 files = files.concat(_files);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	572
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	573 // set score for the word in each file to Scorer.term
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	574 for (j = 0; j < _files.length; j++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	575 file = _files[j];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	576 if (!(file in scoreMap))
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	577 scoreMap[file] = {}
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	578 scoreMap[file][word] = o.score;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	579 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	580 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	581
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	582 // create the mapping
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	583 for (j = 0; j < files.length; j++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	584 file = files[j];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	585 if (file in fileMap)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	586 fileMap[file].push(word);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	587 else
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	588 fileMap[file] = [word];
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	589 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	590 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	591
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	592 // now check if the files don't contain excluded terms
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	593 for (file in fileMap) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	594 var valid = true;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	595
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	596 // check if all requirements are matched
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	597 if (fileMap[file].length != searchterms.length)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	598 continue;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	599
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	600 // ensure that none of the excluded terms is in the search result
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	601 for (i = 0; i < excluded.length; i++) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	602 if (terms[excluded[i]] == file \|\|
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	603 titleterms[excluded[i]] == file \|\|
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	604 $u.contains(terms[excluded[i]] \|\| [], file) \|\|
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	605 $u.contains(titleterms[excluded[i]] \|\| [], file)) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	606 valid = false;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	607 break;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	608 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	609 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	610
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	611 // if we have still a valid result we can add it to the result list
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	612 if (valid) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	613 // select one (max) score for the file.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	614 // for better ranking, we should calculate ranking by using words statistics like basic tf-idf...
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	615 var score = $u.max($u.map(fileMap[file], function(w){return scoreMap[file][w]}));
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	616 results.push([filenames[file], titles[file], '', null, score]);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	617 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	618 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	619 return results;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	620 },
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	621
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	622 /**
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	623 * helper function to return a node containing the
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	624 * search summary for a given text. keywords is a list
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	625 * of stemmed words, hlwords is the list of normal, unstemmed
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	626 * words. the first one is used to find the occurrence, the
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	627 * latter for highlighting it.
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	628 */
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	629 makeSearchSummary : function(text, keywords, hlwords) {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	630 var textLower = text.toLowerCase();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	631 var start = 0;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	632 $.each(keywords, function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	633 var i = textLower.indexOf(this.toLowerCase());
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	634 if (i > -1)
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	635 start = i;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	636 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	637 start = Math.max(start - 120, 0);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	638 var excerpt = ((start > 0) ? '...' : '') +
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	639 $.trim(text.substr(start, 240)) +
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	640 ((start + 240 - text.length) ? '...' : '');
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	641 var rv = $('<div class="context"></div>').text(excerpt);
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	642 $.each(hlwords, function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	643 rv = rv.highlightText(this, 'highlighted');
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	644 });
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	645 return rv;
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	646 }
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	647 };
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	648
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	649 $(document).ready(function() {
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	650 Search.init();
4ced8f116509 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 23b12dd763c0235674988ebdf6a258afd1ad629a-dirty yating-l parents: diff changeset	651 });